RnoEX0072483 @ rn6
Exon Skipping
Gene
ENSRNOG00000018486 | RGD1311084
Description
similar to 1700113K14Rik protein [Source:RGD Symbol;Acc:1311084]
Coordinates
chr3:9630364-9632240:-
Coord C1 exon
chr3:9632128-9632240
Coord A exon
chr3:9630654-9630819
Coord C2 exon
chr3:9630364-9630538
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTCTCTCTTCTAGTCC
3' ss Score
11.99
5' ss Seq
CGAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
CCCCTCTGGAGAAGGCTCAAGACCCCGCAGACGGTATTGTCCTTTCCGGGTGCGATTCGCAGACGAGACCTTGCAGGATACAGCACTCCGGTACTGGGAACGTAACCGGGCAG
Seq A exon
TCCGGCAGAATATCTTACCGAGCGAGCAGACGGCTTTGCCAGCTGTATCTGTGTCAGAGCGAGTGCTTGGGAGTGTTGGGAGATGGTTGGACAGTCTGCCCAGAGCCCTTCAACCCAGGGTCCAAGACACCGCGGCTAGCTCCTCATGCTGGAACTGCCCCCGCGA
Seq C2 exon
GTCAGCTCAGGAACCACAGCTCTACCTTTCTGAGGATGCCACCGTGAGCAGCCGCCTACCCTTCATCTCCAGGGCCACCGCCCCAAGGCCAAGGGGAGGCCTAAGAACCTTCCTGGACACCCCTAACAATCCGGAGCAGGTGGGCAAATCGCCCTGTCCCGGGAGCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018486_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.232 C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGGAGAAGGCTCAAGA
R:
CACCTGCTCCGGATTGTTAGG
Band lengths:
254-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]