MmuALTD0008444-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026857 | Mettl11a
Description
methyltransferase like 11A [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30675195-30676221:+
Coord C1 exon
chr2:30675195-30675288
Coord A exon
NA
Coord C2 exon
chr2:30675969-30676221
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGG
5' ss Score
5.84
3' ss Seq
ACGTTGCCCCTGTGTTTTAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
CGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGG
Seq A exon
NA
Seq C2 exon
GAAGGCCCAAACAAGACAGGGACTTCCTGTGCCTTGGACTGTGGCGCTGGTATTGGAAGGATCACCAAGCGCCTGCTCCTGCCACTCTTCAGGGTGGTCGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCTGGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857-7-8,8-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCGAGGTGATTGAGGATG
R:
CAGTCCAAGGCACAGGAAGTC
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: