HsaALTD0003882-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000148335 | METTL11A
Description
methyltransferase like 11A [Source:HGNC Symbol;Acc:23373]
Coordinates
chr9:132394929-132396585:+
Coord C1 exon
chr9:132394929-132395080
Coord A exon
NA
Coord C2 exon
chr9:132396333-132396585
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGG
5' ss Score
5.84
3' ss Seq
TATATGCCTCTGCTTTTCAGGAA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GAGAGTCGCGGTTGCTGATCGTGGTGCTTGAGTAGAGCCGTGGTTGGTGACAGCATGACGAGCGAGGTGATAGAAGACGAGAAGCAATTCTATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGGGGG
Seq A exon
NA
Seq C2 exon
GAAGGCCCGAACAAGACAGGAACGTCCTGTGCCCTGGACTGTGGAGCTGGCATTGGGAGGATCACCAAGCGGCTGCTCCTGCCGCTGTTCAGAGAGGTGGATATGGTCGACATAACGGAGGACTTCCTGGTTCAAGCCAAGACCTACCTGGGGGAGGAGGGCAAGAGGGTGAGGAACTACTTCTGTTGTGGGCTCCAGGACTTCACCCCGGAGCCGGACTCTTACGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335-5-8,6-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.3=85.2)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGTGACAGCATGACGAG
R:
GACGTTCCTGTCTTGTTCGGG
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)