MmuALTD0008444-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026857 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30819675-30820701:+
Coord C1 exon
chr2:30819675-30819768
Coord A exon
NA
Coord C2 exon
chr2:30820449-30820701
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGG
5' ss Score
5.84
3' ss Seq
ACGTTGCCCCTGTGTTTTAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
CGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGG
Seq A exon
NA
Seq C2 exon
GAAGGCCCAAACAAGACAGGGACTTCCTGTGCCTTGGACTGTGGCGCTGGTATTGGAAGGATCACCAAGCGCCTGCTCCTGCCACTCTTCAGGGTGGTCGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCTGGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857-11-15,12-15,13-15,14-15-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(71.4=75.8)
A:
NA
C2:
PF058917=Methyltransf_PK=PD(56.8=96.9),PF044449=Dioxygenase_N=WD(100=66.2)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCGAGGTGATTGAGGATG
R:
CAGTCCAAGGCACAGGAAGTC
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types