Special

MmuEX0032959 @ mm9

Exon Skipping

Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29747706-29749089:+
Coord C1 exon
chr2:29747706-29747796
Coord A exon
chr2:29748521-29748674
Coord C2 exon
chr2:29748964-29749089
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTAGTTTACTCATCCACAGATC
3' ss Score
7.18
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTTACG
Seq A exon
ATCCATCTTTTTTGTGTTGCCCTCCCCTGCCTGCCAGAAGTGAACCATGAAGGACCGATCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACTCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCGTCAGCAGCCAGCAGCCAG
Seq C2 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.674 A=0.898 C2=0.938
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000109388f6171A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109394





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109386, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000117628, ENSMUSP00000121207
          









    
Other Skipping Isoforms:
ENSMUSP00000028128, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109395, ENSMUSP00000109396, ENSMUSP00000117887
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:128460513-128460666 
ALTERNATIVE
HsaEX0044598
(ODF2)
Human
(hg19)
chr9:131222829-131222945 
ALTERNATIVE
HsaEX0044598
(ODF2)
Rat
(rn6)
chr3:8453603-8453716 
ALTERNATIVE
RnoEX0062091
(Odf2)
Cow
(bosTau6)
chr11:99051106-99051222 
ALTERNATIVE
BtaEX0025319
(ODF2)
Chicken
(galGal4)
chr17:5112625-5112736 
ALTERNATIVE
GgaEX0006528
(ODF2)
Chicken
(galGal3)
chr17:5738343-5738496 
ALTERNATIVE
GgaEX0006528
(ODF2)
Zebrafish
(danRer10)
chr21:13032751-13032870 
HIGH PSI
DreEX6083469
(odf2a)
Zebrafish
(danRer10)
chr8:31007198-31007364 
HIGH PSI
DreEX6050591
(odf2b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CATCGTGTGGGAAGAACGGAG

				
R: 
CTCCCACTTGCATCCCACATG

				
Band lengths: 
212-366

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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