RnoEX0062091 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8452758-8454070:+
Coord C1 exon
chr3:8452758-8452848
Coord A exon
chr3:8453563-8453716
Coord C2 exon
chr3:8454002-8454070
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTAGTTTACTCATCCACAGATC
3' ss Score
7.18
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
ATCGATCTTTTTTGTGTTGCCCTCCCCTGCCTGCCAGAAGTGAACCATGAAGGACCGATCTTCAACTCCCCCCTTACATGTTCATGTGGATGAGAACACTCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCAGCCAGCAGCCAG
Seq C2 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.444 C2=0.972
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(60.0=100)
A:
PF106014=zf-LITAF-like=PD(34.0=54.8)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000020407fB10051
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTGGGAAGAACGGAG
R:
CTTGGTTTTCACCCGGACACT
Band lengths:
155-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]