RnoINT0105051 @ rn6
Intron Retention
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8452758-8454070:+
Coord C1 exon
chr3:8452758-8452848
Coord A exon
chr3:8452849-8454001
Coord C2 exon
chr3:8454002-8454070
Length
1153 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
AGTTTTGTCCCTCTCCACAGAAA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
GTAGGTGACCCTCACAACAGCACCCTCAGAACCGCTTTTGCCATCCTTTGCTGGGACTGCCCAGGGACTCTGTACAGAGCTGTTAAACATAGCCTGCTTGCTGATGGAGCAAGCTGTGAGGAGGTTGTCCTGATGTCCTTCCAGGGAAATCCCAACATCTTTAGAACAGCTGTTTTTAAAAAGAAAAAGAAAAAAAATTGAAAATCATGAGAGACATGGGATGGGAGCTGTTGGTGGGCAAGGCCGTTCCTGGGTACAGCTCTGCTCATGCTTTCTCTGGAGTCTGTACAACCTTCTCACTCTTGGCATCCCAATTAGCCTCTGTGCCCTAGGTTCTTACTTGCATGTGGCCTGCATGCATCTATGCCTTAACCATTTTGAGTGTTTCCCATACTAATTCGCATGCCTGGTTGGAAGGTACAGCTTTGCAGCTGACCTACACTAAGTCCAAGGAGGAGCTGCCCAATCCCTCTGGCTTGGGCAGAGTTGCAGCTCTGAGGATCCTGCTTGTGCTTTTAGAGAACCTTGTCCTGAGCTGGCCTGGAGGCTTTCAGCTGAGACCTCTGCAGAGTCTGCCCAAGTGACTTGCCTGCCTTGCTTCCTGCCTGCATGCCAGTAGTTGGTGGCTGTCCTGCTCACTTGGTGGCTGAGCTTTCAGGTGTCCTCCTAGAAGCCTCTGAGCTCTGTTTTTATGCCTAGTTTACTCATCCACAGATCGATCTTTTTTGTGTTGCCCTCCCCTGCCTGCCAGAAGTGAACCATGAAGGACCGATCTTCAACTCCCCCCTTACATGTTCATGTGGATGAGAACACTCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCAGCCAGCAGCCAGGTAGGAGCATGGCAGTGGGGCGAGGTCACAGCTGTGGATCAGGGCGCTCTCTTCCCGGCCCAGCCGCCTCGCACTTCTGACTCCAAAGGTTTGGGAGACACATTTTTTTCTGGAGGTCAGTTGCCTGGTTAGAAGGTAGGCCTCTGGTCTCCAGCAGCACCAGCAGCAGCAGCCGCAGCAACAGCATGACTCAGAAGAGACCTCTCTGCAAAGGTGGCATATGCTACCAGAGTGACACTGGGCAGCTGGGTCTGGCAATGATTCTAGTTTTGTCCCTCTCCACAG
Seq C2 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584:ENSRNOT00000020073:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(60.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]