HsaINT0117831 @ hg19
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131221846-131222945:+
Coord C1 exon
chr9:131221846-131221936
Coord A exon
chr9:131221937-131222791
Coord C2 exon
chr9:131222792-131222945
Length
855 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
CCCAGTTTACTCATCCACAGATC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
GTAGGTGATGCACTCACGTAGCAGCCCTCTTTGGTCACCTTGCTAAAAATGCTTTTGCACACCGTTTCTAGGAGGTGCCTTACCCTGCTGGGCACCATCGCCGCCCAGTTGCTCTGCTAGGTGCTGTTATACATACTCTGCTGATTTTTAATTATGATCATCATTTTTGCCTGTGGTGAGGCTGCCGGGTGTGAGGAAATTGTCTTAGACTTATTCTTCCAGCCAAATCCTAAAATCTTGAGATTTTTAAAATAAAGGAAAAGAAAAAGAAGAGAAAAAAAAAGTTTAAAGAATGAGGGGAAGGATAAGAGCTGGTGGTGGTTGAGGGGTTTGTAGCTGTGGTTCTGCCTTGCTCATGTTTTCTTTAGAATCTAGACAGCCTTCTCATCCTTAGGATTTCCTTCAGCTTTCTGTTTTCCTGTTCTTTGATCTGCCTGCTCTCTGATTTATTCTGCACCCTGAGCATTTTGTGTGTTTCCCACGCCAATCTGCATGCCCAGTTGAGATCACTGTGTAGAAGGATCCGCCTGCTTTCCGCTGTGCTTCACTAAATCCAAGGAGGAGCTGTGCATTCCAGCAGGTTTAGAGGAGATCCAGCCCTAAGAACCCTGGGGCCGGCGTCTGGGATCTGTTCTGGAACGGGTGGGTCTTGCAGACCCTCTCTTGAGTGGACCAGAATCTCCCTTGTGGTCTTCTGCTGGGATCTCTGCAGGAGCCTGCTGAATGATACTCCCGCCTTACTCCCTGCCTGCATGCCAGTAGTTGGTAGCTGTCCTGCTCGCTTGGTGGCTAGGCTTTTTGGTGGCCCCCAGAGGCTGTGAGCTCTGTTTTTATGCCCAGTTTACTCATCCACAG
Seq C2 exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-ODF2:NR_036754:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.863
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041569=IncA=PU(14.0=75.0),PF134761=AAA_23=PU(3.8=16.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCATCGTGTGGGAAGAAC
R:
CTGCTGGTCGCTGATGGTTTC
Band lengths:
241-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)