BtaINT0105361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99050165-99051559:+
Coord C1 exon
chr11:99050165-99050255
Coord A exon
chr11:99050256-99051433
Coord C2 exon
chr11:99051434-99051559
Length
1178 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
GGGTTTGTCCCTTTCCACAGAAA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGAAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGGACACCTTGCGGCGCACCCAGTGTTACCGTGACG
Seq A exon
GTAGGTGACATGCGCTCGGAGCAGCCCCTCCACCTGCGGCCCTGCCAGAAAAAAACGCACGCTTCTGCTGGCACCCCGGTGGCCAGGCGCTCTGTTACATGCCTTCATACATAGACTGCTCATGGATCGATTTGGCTTTGCCTGTGGTAAGGCTGCCGGGTGTGAGGAGGTTGTCTTACTCTAATCTTTCTGGACAGATTTCAAAAATCATAAAACAAATTTTCCAAAAAGAAAGAAGGGAAAAAATGTAAAAGAACTGGGACTGATAGGAGCTGCTGGTGGGCGAGGGGGTCTGTGTTTGGCCCTGCTTATGTTGTCTTTAGAATCTGTACAACCTTCTCATCTCGGCATTTCTTCCAGCTTTCTGTCTTGATCGTCTTTTACCTGCCTGCTGCTTGTTGTGCCTTGCACCCTAACCCTTCTGTGTGTTTCCCATGCTAATCCGCATGCCCCGTTCAGATTTAGCATGGCGGCCTCACCCGCTTTCCAGCTGTGCTGTGCTGCGTCTCAGGAGGAGCCGTGCGTTCCAGCAGGCTTGCAAAGAGATGGAGCTCTGAGGACCCCGGGGCCTTGGGTTTAGGGCTCTTGTGTAGAACTCGTGGGTCGCTCAGCCCCTGTTCTTGGGTGGCCTTGGGTCTCCCCAGTGGTCTTCAGTTGGCATCTCTGCATGAGCCTGCTGAACGGCACACCCGTCTCGCTTCCCGCCTGCATGCCAGTAGTGCTGGTCGCTGTCCTGCTCGCTTGATGGCTAGGCTTTCAGTGGCCCCCAGAGGCTGTGAGCTCGGTTTTTATGCCCAGTTTACTCATCCGCAGATCAACCTTTTTTGTGTTGTCCTCCCCCGCCTGCCAGAAGCGAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCTCCAAAACGTCAGCGACCAACAGCCAGGTAGGAGCATGCCAGGGGGGTGAGGCCAACGCACTCACTTTCAGAGGTCAGTCGCCTGGTTGGAAGGTAGGCAGGACAGTCACCCAGAAAAGGCAGCAGTAGCCTTGGTCAGAAGAGGCTCCCCTGCAGAGTTGGAAGCGGACGCCACTTGCAGAGTGACGCCACGGCCAGCTGTGTAGGGAAGTGACCCTGGGTTTGTCCCTTTCCACAG
Seq C2 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCCGCCCGGCATGTGGGATGCAATTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567:ENSBTAT00000020325:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(61.2=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTGGAAAGAACGGAG
R:
CTCCCAATTGCATCCCACATG
Band lengths:
212-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development