HsaINT0117820 @ hg38
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128459567-128460666:+
Coord C1 exon
chr9:128459567-128459657
Coord A exon
chr9:128459658-128460512
Coord C2 exon
chr9:128460513-128460666
Length
855 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
CCCAGTTTACTCATCCACAGATC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
GTAGGTGATGCACTCACGTAGCAGCCCTCTTTGGTCACCTTGCTAAAAATGCTTTTGCACACCGTTTCTAGGAGGTGCCTTACCCTGCTGGGCACCATCGCCGCCCAGTTGCTCTGCTAGGTGCTGTTATACATACTCTGCTGATTTTTAATTATGATCATCATTTTTGCCTGTGGTGAGGCTGCCGGGTGTGAGGAAATTGTCTTAGACTTATTCTTCCAGCCAAATCCTAAAATCTTGAGATTTTTAAAATAAAGGAAAAGAAAAAGAAGAGAAAAAAAAAGTTTAAAGAATGAGGGGAAGGATAAGAGCTGGTGGTGGTTGAGGGGTTTGTAGCTGTGGTTCTGCCTTGCTCATGTTTTCTTTAGAATCTAGACAGCCTTCTCATCCTTAGGATTTCCTTCAGCTTTCTGTTTTCCTGTTCTTTGATCTGCCTGCTCTCTGATTTATTCTGCACCCTGAGCATTTTGTGTGTTTCCCACGCCAATCTGCATGCCCAGTTGAGATCACTGTGTAGAAGGATCCGCCTGCTTTCCGCTGTGCTTCACTAAATCCAAGGAGGAGCTGTGCATTCCAGCAGGTTTAGAGGAGATCCAGCCCTAAGAACCCTGGGGCCGGCGTCTGGGATCTGTTCTGGAACGGGTGGGTCTTGCAGACCCTCTCTTGAGTGGACCAGAATCTCCCTTGTGGTCTTCTGCTGGGATCTCTGCAGGAGCCTGCTGAATGATACTCCCGCCTTACTCCCTGCCTGCATGCCAGTAGTTGGTAGCTGTCCTGCTCGCTTGGTGGCTAGGCTTTTTGGTGGCCCCCAGAGGCTGTGAGCTCTGTTTTTATGCCCAGTTTACTCATCCACAG
Seq C2 exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811:ENST00000469582:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.624 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCATCGTGTGGGAAGAAC
R:
CTGCTGGTCGCTGATGGTTTC
Band lengths:
241-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development