BtaALTA0020735-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99050165-99051222:+
Coord C1 exon
chr11:99050165-99050255
Coord A exon
chr11:99051069-99051108
Coord C2 exon
chr11:99051109-99051222
Length
40 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
CCCAGTTTACTCATCCGCAGATC
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGAAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGGACACCTTGCGGCGCACCCAGTGTTACCGTGACG
Seq A exon
ATCAACCTTTTTTGTGTTGTCCTCCCCCGCCTGCCAGAAG
Seq C2 exon
CGAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCTCCAAAACGTCAGCGACCAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-7-7,7-6,7-5,7-4-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(61.2=100)
A:
NA
C2:
PF106014=zf-LITAF-like=PD(32.7=51.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTAACGAGTCTCACGCAG
R:
GGACAGGGGTGTTCTCATCCA
Band lengths:
136-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development