GgaALTA0002425-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5111833-5112736:+
Coord C1 exon
chr17:5111833-5111917
Coord A exon
chr17:5112583-5112624
Coord C2 exon
chr17:5112625-5112736
Length
42 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCCAGTTTCCTTATTCACAGGTT
3' ss Score
7.18
Exon sequences
Seq C1 exon
GTTTCCCTCATCCATCGAAAATGAAATGACATCAGTATCTGCACAGAGCACAGTGTCAAGAGGAGGAAAAAGCCTTAAAATAACT
Seq A exon
GTTTCCTTTCATTGTATTCTCCTTTCCCGTCTGCGGGAGAAG
Seq C2 exon
AGCCATGAAGAACCGTTCCTCATCTCCCCCTTTGCACGTCCATGTGGATGAAAACACCCCTGTCCATGTCCATATTAAAAAGGGTCAGAAAACCACACCTGCAAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-8-3,8-2,8-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCACAGTGTCAAGA
R:
TGCAGGTGTGGTTTTCTGACC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]