HsaALTA0005938-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128459567-128460666:+
Coord C1 exon
chr9:128459567-128459657
Coord A exon
chr9:128460513-128460552
Coord C2 exon
chr9:128460553-128460666
Length
40 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
CCCAGTTTACTCATCCACAGATC
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAG
Seq C2 exon
CCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-11-22,11-21,11-20,11-19-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.624 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTGGGAAGAACGGAG
R:
CCACGTGAACATGTAAGGGGG
Band lengths:
135-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains