HsaINT0117821 @ hg19
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131222829-131223289:+
Coord C1 exon
chr9:131222829-131222945
Coord A exon
chr9:131222946-131223220
Coord C2 exon
chr9:131223221-131223289
Length
275 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GGGTTTGTCCCTTTCCACAGAAA
3' ss Score
9.98
Exon sequences
Seq C1 exon
AAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
Seq A exon
GTAGGAGCATGCCAGTGGGGCGAGGTAGTAGCTGTGGATCTGGGTGATCCTGCTAAGCCCAGCCTCCTCGCACTCTGACTCCAAAGGTTTGGGAGACAAACACACTCTTTCGGAGGCCGGTTTCCTGGTTAGAAGGTAGGCAGGCCTGTCATCCAGGAGCAACAGCAGTAACATTAGTCAGAAGAGGCACTCTGCTAGTCGGAGAGGGATGTCACTAGCGTGGCACCGTGGCCAGCTGGGTGTGGAAGTGACCCTGGGTTTGTCCCTTTCCACAG
Seq C2 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-ODF2:NM_002540:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041569=IncA=FE(11.4=100),PF134761=AAA_23=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCATGAAGGACCGCTCTT
R:
CTTGGTTTTCACCCGGACACT
Band lengths:
182-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)