HsaINT0117821 @ hg38
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128460513-128461067:+
Coord C1 exon
chr9:128460513-128460666
Coord A exon
chr9:128460667-128460941
Coord C2 exon
chr9:128460942-128461067
Length
275 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GGGTTTGTCCCTTTCCACAGAAA
3' ss Score
9.98
Exon sequences
Seq C1 exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
Seq A exon
GTAGGAGCATGCCAGTGGGGCGAGGTAGTAGCTGTGGATCTGGGTGATCCTGCTAAGCCCAGCCTCCTCGCACTCTGACTCCAAAGGTTTGGGAGACAAACACACTCTTTCGGAGGCCGGTTTCCTGGTTAGAAGGTAGGCAGGCCTGTCATCCAGGAGCAACAGCAGTAACATTAGTCAGAAGAGGCACTCTGCTAGTCGGAGAGGGATGTCACTAGCGTGGCACCGTGGCCAGCTGGGTGTGGAAGTGACCCTGGGTTTGTCCCTTTCCACAG
Seq C2 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811:ENST00000469582:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTTTTGTGTTGTCCTCCCC
R:
CTCCCACTTGCATCCCACAG
Band lengths:
276-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development