GgaEX0006528 @ galGal3
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
NA
Coordinates
chr17:5737593-5740047:+
Coord C1 exon
chr17:5737593-5737677
Coord A exon
chr17:5738343-5738496
Coord C2 exon
chr17:5739922-5740047
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCCAGTTTCCTTATTCACAGGTT
3' ss Score
7.18
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTCCCTCATCCATCGAAAATGAAATGACATCAGTATCTGCACAGAGCACAGTGTCAAGAGGAGGAAAAAGCCTTAAAATAACT
Seq A exon
GTTTCCTTTCATTGTATTCTCCTTTCCCGTCTGCGGGAGAAGAGCCATGAAGAACCGTTCCTCATCTCCCCCTTTGCACGTCCATGTGGATGAAAACACCCCTGTCCATGTCCATATTAAAAAGGGTCAGAAAACCACACCTGCAAAATGCCAG
Seq C2 exon
CAAAAGCACAAACAGAAAATGAAAGGGAATACTGTGAACGTGCGCCGAGCAGTCCAGGTGAAAACAAAGGCCCCCTGGATGCCCCCAGGAAAAACATCTGTCCTTGATTCCACCTACAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.607 C2=0.929
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCTCATCCATCGAAAATGA
R:
TCCCATTTGTAGGTGGAATCAAGG
Band lengths:
210-364
Functional annotations
There are 0 annotated functions for this event