HsaEX0044598 @ hg19
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131221846-131223289:+
Coord C1 exon
chr9:131221846-131221936
Coord A exon
chr9:131222792-131222945
Coord C2 exon
chr9:131223221-131223289
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCCAGTTTACTCATCCACAGATC
3' ss Score
7.7
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
ATCAACCATTTTTGTGTTGTCCTCCCCCACCTGCCAGAAGCCAACCATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAG
Seq C2 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811_MULTIEX1-2/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.863 C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041569=IncA=FE(11.4=100),PF134761=AAA_23=FE(13.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTGGGAAGAACGGAG
R:
CTTGGTTTTCACCCGGACACT
Band lengths:
155-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)