DreEX6050591 @ danRer10
Exon Skipping
Gene
ENSDARG00000020702 | odf2b
Description
outer dense fiber of sperm tails 2b [Source:ZFIN;Acc:ZDB-GENE-041008-119]
Coordinates
chr8:31006941-31007560:+
Coord C1 exon
chr8:31006941-31007004
Coord A exon
chr8:31007198-31007364
Coord C2 exon
chr8:31007459-31007560
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTTTTCTTACAAGTTT
3' ss Score
6.65
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CGAGACTACCGGGTAGTGCAAACAACATTACCCGGGGGATGCAACGTTGTATACTTGACTTGAG
Seq A exon
TTTCTGACACACATCTGGGACACTTTTTCATACCTGTAACTGTTTTAAGACCGTCTTACTAAAGTGAAGGGATGAAAACACGGTCGTCTTCTCCGCCCGTTCATGTTCATATCCCAGACTCCACATCTGTGCATGTTCACCTGAAGAAGAGCCCACAGAGGAGCCAG
Seq C2 exon
CAGGCAAAAGTGAGCAGTTTGCGATCCACTGCCAGTGTGAAGGTCCGAGCTCCATGGGTTCCTCCTGGAAAGAGCTCAACACGAAGACAGTACAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020702-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.794
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCGGGTAGTGCAAACAAC
R:
CTCCCATTTGTACTGTCTTCGTGT
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]