GgaALTA0002425-1/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004767 | ODF2
Description
NA
Coordinates
chr17:5737593-5738496:+
Coord C1 exon
chr17:5737593-5737677
Coord A exon
NA
Coord C2 exon
chr17:5738385-5738496
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTCCCGTCTGCGGGAGAAGAGC
3' ss Score
-2.79
Exon sequences
Seq C1 exon
GTTTCCCTCATCCATCGAAAATGAAATGACATCAGTATCTGCACAGAGCACAGTGTCAAGAGGAGGAAAAAGCCTTAAAATAACT
Seq A exon
NA
Seq C2 exon
AGCCATGAAGAACCGTTCCTCATCTCCCCCTTTGCACGTCCATGTGGATGAAAACACCCCTGTCCATGTCCATATTAAAAAGGGTCAGAAAACCACACCTGCAAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-3-3,3-2,3-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.607
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCACAGTGTCAAGA
R:
TGCAGGTGTGGTTTTCTGACC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]