MmuEX0034123 @ mm9
Exon Skipping
Gene
ENSMUSG00000009030 | Pdcl
Description
phosducin-like [Source:MGI Symbol;Acc:MGI:1914716]
Coordinates
chr2:37212724-37214852:-
Coord C1 exon
chr2:37214663-37214852
Coord A exon
chr2:37213872-37213918
Coord C2 exon
chr2:37212724-37212900
Length
47 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTGGTTGCTGTTCAGCGT
3' ss Score
6.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GATAAGCTTCTTGTGATTGGGTAGCGTGCGTCCGCCGCGACGCCGGAAGGCCGTGTGATTGGTCCGCAGAGTCCACGGCAGCTTTTTCTCTGTCGCTCAAGGCTTTCGGCCACTTCTCTTTCTCTAGGCGAGCGTCCTTTGTTGGTGACAGGAGCTGCTAGTCTAGAAGGAGCAGACTGAGCGAGGCGAG
Seq A exon
CGTGCACAGTGCTCTGTCCTGACTGGAATCTGCTGTGTGGGAGAGAG
Seq C2 exon
GCACCATGACAACCCTGGATGATAAGTTACTGGGGGAGAAATTACAGTACTACTACAGCACCAGCGAGGATGAGGACAGTGACCATGAAGACAAAGACAGAGGCAGGGGAGCACCAGCCATTAGTTCCACACCTGCAGAGGCTGAGCTGGCAGGCGAAGGCATCTCCATCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009030_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.741
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0211411=Phosducin=PU(14.5=39.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCCTTTGTTGGTGACA
R:
TGGTCACTGTCCTCATCCTCG
Band lengths:
146-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types