MmuEX0034123 @ mm10
Exon Skipping
Gene
ENSMUSG00000009030 | Pdcl
Description
phosducin-like [Source:MGI Symbol;Acc:MGI:1914716]
Coordinates
chr2:37357204-37359332:-
Coord C1 exon
chr2:37359143-37359332
Coord A exon
chr2:37358352-37358398
Coord C2 exon
chr2:37357204-37357380
Length
47 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTGGTTGCTGTTCAGCGT
3' ss Score
6.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GATAAGCTTCTTGTGATTGGGTAGCGTGCGTCCGCCGCGACGCCGGAAGGCCGTGTGATTGGTCCGCAGAGTCCACGGCAGCTTTTTCTCTGTCGCTCAAGGCTTTCGGCCACTTCTCTTTCTCTAGGCGAGCGTCCTTTGTTGGTGACAGGAGCTGCTAGTCTAGAAGGAGCAGACTGAGCGAGGCGAG
Seq A exon
CGTGCACAGTGCTCTGTCCTGACTGGAATCTGCTGTGTGGGAGAGAG
Seq C2 exon
GCACCATGACAACCCTGGATGATAAGTTACTGGGGGAGAAATTACAGTACTACTACAGCACCAGCGAGGATGAGGACAGTGACCATGAAGACAAAGACAGAGGCAGGGGAGCACCAGCCATTAGTTCCACACCTGCAGAGGCTGAGCTGGCAGGCGAAGGCATCTCCATCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009030_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.718
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0211411=Phosducin=PU(27.1=39.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCCTTTGTTGGTGACA
R:
TGGTCACTGTCCTCATCCTCG
Band lengths:
146-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types