MmuEX0039249 @ mm9
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37232654-37233455:-
Coord C1 exon
chr2:37233371-37233455
Coord A exon
chr2:37232875-37232956
Coord C2 exon
chr2:37232654-37232788
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAATATAATTCTTTTTAAAGGGA
3' ss Score
5.2
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTATGTCCCTTACGTGAATGCTGTCGATTCAAGGTGGAGTTCATATGGCAACGATGCTACATCATCAGCACACTATATTGAACG
Seq A exon
GGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAGCATTCTAGTACCGGAGACCTTTTGAGCATTGAACTTCAGCAG
Seq C2 exon
GCCAAGAGTAACTCATTACTTCTTCAGAGGGAAGCTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACTTTAAATCTTCTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTACGTGAATGCTGTCGA
R:
TAAGGTGACGGCCTTCATCCA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: