RnoEX0074848 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21629177-21629813:-
Coord C1 exon
chr3:21629729-21629813
Coord A exon
chr3:21629398-21629473
Coord C2 exon
chr3:21629177-21629311
Length
76 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTTTAAAGGGACAGATT
3' ss Score
-2.14
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTATGTCCCTTATGTTAATGCTGTCGATTCAAGGTGGAGTTCATATGGTAACGATGCCACATCATCAGCACACTATATTGAACG
Seq A exon
ATTCATTGTTACCGATTTATCTGGTCATAGAAAGCACTCCAGTACCGGAGACCTCTTGAGCCTTGAGCTTCAGCAG
Seq C2 exon
GCCAAGAGTAACTCATTACTTCTTCAGAGGGAAGCTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCATCTTACTTTAAATCTCCTAAGCAAGGAAATTGAACTGAGAAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-'24-27,'24-26,25-27
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCTTATGTTAATGCTGTCGA
R:
GATGACGGCCTTCATCCAGG
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]