DreEX6087231 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9805536-9811160:+
Coord C1 exon
chr10:9805536-9805620
Coord A exon
chr10:9809107-9809284
Coord C2 exon
chr10:9811024-9811160
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCAGTGTGTCTGTGTTTCAGCGA
3' ss Score
9.34
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACTATGGCTGTCATATTGGTCACAGTGACCTTAGATGGGGCCCACGCAGTTCTGATTCCTCCACTCACTCCAGCTTTTTAGAAAG
Seq A exon
CGATCATCTGGCAGTTTCTGGACTGCATGCAAGACGAACTTCCTTCAGCAGTGGGACAAAGCAGGGCTTGGATCTGATGGGGAAGGATGAGACAGAGAATGAAACTGACAGGGATATTGAGCTGGAGCTGTCTGCTTTGGACATCGAGGACACAGAGACACACGACTGCAACTCGGAG
Seq C2 exon
GACACAATGGAAATGCAAAGCCGCTCCCAAAGCAGCCACCTCTCTACAGTCTTTAGTGATCCAGCATCCAGTTCACAGTTAGAAAATGACCTGCCTGACAGAATGGATGCTAACCTTATGAAAAAAATGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'25-21,'25-20,26-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.775 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGGCTGTCATATTGGTCACA
R:
TTTTTCATAAGGTTAGCATCCATTCT
Band lengths:
210-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]