BtaEX6046015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94011912-94012581:-
Coord C1 exon
chr11:94012497-94012581
Coord A exon
chr11:94012147-94012228
Coord C2 exon
chr11:94011912-94012046
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACAAATTTCTCTTTAAAGCGA
3' ss Score
5.95
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTATGTACCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGTAATGAGGCTACATCATCAGCACATTATATTGAACG
Seq A exon
CGACAGATTCATTGTTACCGATTTATCTGGTCATAGAAAGCATTCCAGTACTGGAGACCTTTTGAGCATTGAACTTCAGCAG
Seq C2 exon
GCCAAGAGTAACTCATTGCTTCTTCAGAGGGAGGCCAATGCTCTGGCTATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTCACATTAAATCTTCTAAGTAAGGAAATTGAACTGAGAAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867-'19-27,'19-25,20-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGATTCAAGGTGGAGT
R:
AGATTTAATGTGAGGTGACGGCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]