HsaEX0052837 @ hg38
Exon Skipping
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr9:122853952-122854615:-
Coord C1 exon
chr9:122854531-122854615
Coord A exon
chr9:122854185-122854266
Coord C2 exon
chr9:122853952-122854086
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAACATATTTCTCTTTAAAGGGA
3' ss Score
6.76
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTATGTCCCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGCAACGAGGCCACATCATCAGCACACTATGTTGAAAG
Seq A exon
GGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAGCATTCCAGTACTGGGGACCTTTTGAGCCTTGAACTTCAGCAG
Seq C2 exon
GCCAAGAGCAACTCATTACTTCTTCAGAGAGAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAACCTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586-'38-49,'38-46,39-49
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.150 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGATTCAAGGTGGAGT
R:
AGGTTTAAGGTAAGGTGACGGC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development