GgaEX1048717 @ galGal4
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8785789-8786880:-
Coord C1 exon
chr17:8786796-8786880
Coord A exon
chr17:8786288-8786369
Coord C2 exon
chr17:8785789-8785923
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTACCTTTTTTCTCTCAAAGGGA
3' ss Score
9.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTATGTTCCTTATGTCAATGCTGTTGACTCAAGGTGGAGTTCTTATGGCTCAGATTCAGCATCATCAGCACGTTATGCAGAACG
Seq A exon
GGACAGATTCATAGTTACAGATTTGTCTGGTCACAGAAAGCATTCCAGCACTGGAGATCTATTAAGTATTGAATTACAGCAG
Seq C2 exon
GCCAAAAGTAACTCATTATTACTTCAGAGAGAAGCAAATGCACTAGCCATGCAACAGAAGTGGAATTCTCTAGATGAAGGCAGTCGACTTACCTTAAATCTTTTAAGCAAGGATATTGATTTGAGGAATGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'17-21,'17-19,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGACTCAAGGTGGAG
R:
AGATTTAAGGTAAGTCGACTGCCT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]