MmuEX0038771 @ mm9
Exon Skipping
Gene
ENSMUSG00000039844 | Rapgef1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:MGI Symbol;Acc:MGI:104580]
Coordinates
chr2:29562718-29577829:+
Coord C1 exon
chr2:29562718-29562920
Coord A exon
chr2:29565676-29565828
Coord C2 exon
chr2:29577744-29577829
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCCTCCGCCCAGCAGGCC
3' ss Score
7.95
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTGTACGGCTTCAGCGAGTCCTTCTGCGGTAGTGATTCCACGCAGGAGCTGGCCCCTCCACCCGCTCTGCCCCCCAAGCAACGGCAGCTG
Seq A exon
GCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
Seq C2 exon
GAACCACCATCTGGGAAGGACGGACATCCCAGAGATCCTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAAATGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039844_MULTIEX2-1/3=C1-C2
Average complexity
ME(1-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.272 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTGCTGGAGGACTACT
R:
CTTCCCAGATGCACTGCTGAC
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: