DreEX0060808 @ danRer10
Exon Skipping
Gene
ENSDARG00000043593 | rapgef1a
Description
Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
Coordinates
chr8:11756915-11774461:-
Coord C1 exon
chr8:11774265-11774461
Coord A exon
chr8:11765739-11765903
Coord C2 exon
chr8:11756915-11756991
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCACTTCTCTTTCCTCCTAGGCT
3' ss Score
9.76
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TCCTGAAATACATGCAGTTCATGGAGGACTATTCAGAGCCGCTGCCTTCCGTTTTCTATCAGACGCCACAAAGTGAAAGCATTTATGAGCAGCGCAATAGGAAGCGATTTCAGGAAGTGTATGGCCTCAGCGACTCCTTCAGCAGCAGCGATGAGACTCTTCCTCCGCCAGCACTGCCCCCAAAACAGAGACAACTG
Seq A exon
GCTTCCTCACACTCTGCGTCTCCTTCCTCCTCCTCTTCCTCGTCTCTGTCTTGTCAGCTGCAGCAGTGTGTGTCTGGGCCCGGTCCCGGTGAGACAGAGTCCACTCTCAGCCTTTCTGCATCTAACTCCTCTCTGAACCGCGAGGGCTCTCTGCCTGTCCCTACG
Seq C2 exon
GACTCTTTTTGCGGTGCTGAAGATTCGCCCCAGGACTCCGCTATTGAACACAGCAAAGATCCAGCTGACAGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043593_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.982 C2=0.943
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTCAGAGCCGCTGCCTTC
R:
CCCTCTCTGTCAGCTGGATCT
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]