RnoEX0073999 @ rn6
Exon Skipping
Gene
ENSRNOG00000014316 | Rapgef1
Description
Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]
Coordinates
chr3:8262187-8289335:+
Coord C1 exon
chr3:8262187-8262389
Coord A exon
chr3:8264303-8264455
Coord C2 exon
chr3:8289250-8289335
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTCGCCCTCTGCCCAGCAGGCC
3' ss Score
7.77
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTCTATGGCTTCAGCGACTCCTTCTGTGGTAGTGACTCCACGCAGGAGCTGGCCCCTCCACCCGCTTTGCCCCCCAAGCAGCGGCAGCTG
Seq A exon
GCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCCACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
Seq C2 exon
GAACCGCCATCTGGGAAGGACGGACATCCCAGAGATCTTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAAATGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014316_MULTIEX2-1/3=C1-C2
Average complexity
ME(1-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.216 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACATGCAACTGCTGGAGG
R:
AGATGCACTGCTGACCGAAAG
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]