RnoALTA0033015-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014316 | Rapgef1
Description
Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]
Coordinates
chr3:8262187-8264455:+
Coord C1 exon
chr3:8262187-8262389
Coord A exon
chr3:8264300-8264302
Coord C2 exon
chr3:8264303-8264455
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTATTTCGCCCTCTGCCCAGCAG
3' ss Score
4.44
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTCTATGGCTTCAGCGACTCCTTCTGTGGTAGTGACTCCACGCAGGAGCTGGCCCCTCCACCCGCTTTGCCCCCCAAGCAGCGGCAGCTG
Seq A exon
CAG
Seq C2 exon
GCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCCACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014316-31-28,31-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGCGACTCCTTCTGTG
R:
GGAAGAAGCAGCATAGGAGGC
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]