DreALTA0022348-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000043593 | rapgef1a
Description
Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
Coordinates
chr8:11765739-11774461:-
Coord C1 exon
chr8:11774265-11774461
Coord A exon
chr8:11765847-11765903
Coord C2 exon
chr8:11765739-11765846
Length
57 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
GCACTTCTCTTTCCTCCTAGGCT
3' ss Score
9.76
Exon sequences
Seq C1 exon
TCCTGAAATACATGCAGTTCATGGAGGACTATTCAGAGCCGCTGCCTTCCGTTTTCTATCAGACGCCACAAAGTGAAAGCATTTATGAGCAGCGCAATAGGAAGCGATTTCAGGAAGTGTATGGCCTCAGCGACTCCTTCAGCAGCAGCGATGAGACTCTTCCTCCGCCAGCACTGCCCCCAAAACAGAGACAACTG
Seq A exon
GCTTCCTCACACTCTGCGTCTCCTTCCTCCTCCTCTTCCTCGTCTCTGTCTTGTCAG
Seq C2 exon
CTGCAGCAGTGTGTGTCTGGGCCCGGTCCCGGTGAGACAGAGTCCACTCTCAGCCTTTCTGCATCTAACTCCTCTCTGAACCGCGAGGGCTCTCTGCCTGTCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043593-9-13,9-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCGATGAGACTCTTCCT
R:
TCGCGGTTCAGAGAGGAGTTA
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]