RnoEX0074000 @ rn6
Exon Skipping
Gene
ENSRNOG00000014316 | Rapgef1
Description
Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]
Coordinates
chr3:8262187-8289335:+
Coord C1 exon
chr3:8262187-8262389
Coord A exon
chr3:8286558-8286815
Coord C2 exon
chr3:8289250-8289335
Length
258 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTCGGTTCTGCAGTAC
3' ss Score
7.45
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTCTATGGCTTCAGCGACTCCTTCTGTGGTAGTGACTCCACGCAGGAGCTGGCCCCTCCACCCGCTTTGCCCCCCAAGCAGCGGCAGCTG
Seq A exon
TACAAATCTGTGTTTAGGTCTTACTCCCAGGACTTCATGCCTCACCACCAAGCCTCCGTCCAACCTTTCCTTCCGCCTACCTCCTCTTCCTCTCCACATTTCCCACCTGTCCACGCGTCCCAGAGCTCGGACTTAGCGGTGCCCACCGTAAGCAGTCCGCCTCCCAGCACCGTGGACGGGCCTCTCTCGTCTTCTCAGGACAGCAGCTTTCATGGGAACCCTGTCCGCCTTCCTTCCGAAACCTCTTTCACTGACTCG
Seq C2 exon
GAACCGCCATCTGGGAAGGACGGACATCCCAGAGATCTTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAAATGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014316_MULTIEX2-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.826 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTACATGCAACTGCTG
R:
TCCCCATTTTCTCTGCTGTCC
Band lengths:
284-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]