BtaEX0029686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101744409-101761647:-
Coord C1 exon
chr11:101761445-101761647
Coord A exon
chr11:101747557-101747829
Coord C2 exon
chr11:101744409-101744497
Length
273 bp
Sequences
Splice sites
3' ss Seq
GTTCCACTCTGACTCTGTAGTAC
3' ss Score
5.14
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAGCTGCTTGAGGACTACTCGGAGCCACAGCCTTCCATGTTCTACCAGACGCCGCAGAAGGAACACGTGTACCAGCAGAAGAACAAGCTTCTCATGGAGGTGTATGGCTTCAACGACTCCTTCAGCACCGGCGACGCCGCACACGATCTCGCCCCGCCCCCCGCCCTGCCCCCCAAGCAGCGGCAGCTG
Seq A exon
TACAAGTCCGTGTTTAGGTCCTACTCGCAGGATTTCGTGCCTCACAGCCAAGCTTCCGTCCAGCCTTTCCTTCCGTCTACCTCCTCTTCCTCTCCACACTTCCCACCTGTCCACCAGTATCAGAGCTCTGACTTAGCCGTGCCGCCCGTGGCCAGTCTGCCTCCCAGCACCCTGGACGGGCCTCTCTCATCTTCTCAGGAGAGCAGCTTTCACGGGAACACTGTCTGCCTTCCTTCCGAAACCTCTTTCACTGACTCGCCCCAGACGCCTTCG
Seq C2 exon
GAGTCACCCGCGGCGAAGGATGGACACTCCAGAGACGCCACATCGGCCAGCTGTGTGCCCGGGAAGGAGGGCAGGGACAGCGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.802 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCCTACATGCAGCT
R:
CTGTCCCCGCTGTCCCTG
Band lengths:
292-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development