GgaEX0004873 @ galGal4
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr17:6253988-6267621:-
Coord C1 exon
chr17:6267419-6267621
Coord A exon
chr17:6256834-6257115
Coord C2 exon
chr17:6253988-6254076
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGCATCTCCGCGTCCCGTAGTAC
3' ss Score
5
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
TGATGGCGTACATGCAGTTTGTAGAGGACTACTCGGAGCCACAGCCATCTATGTTCTACCAGACCCCTCAGAACGAGCACATCTACCAGCAGAAGAACAAGCACCTCATGGAGGTCTACGGCTTCAACGACTCCTTTATCAGCTTAGACCCTTCTCAAGATCTGGCCCCCCCTCCTGCTCTCCCACCGAAGCAGCGACAGCTG
Seq A exon
TACAAGTCTGTGTTTAGGTCCTACTCGCAGGACTTTGTGCCTCACAACCAGGTCTCCGTACCTCCTTTCCTGTCTTCTACCTCCTCCTCCTGCTCCACCGCGCCCTTTCCGCCCGTCCACCCGTCTCCGAGCTCTGACCTCGCAGTGCCAGCCACGGCCAGCCCGTCTCCCAGCACTGGGGATGTGCCAAACTCCTCTTCGCAGGAGAGCAGCTTTAACGGGAGTGCTCCTGTCTGCCTTCCTTCTGAAACCTCTCTCACTGATTCTCTGCAGACGCCTTCG
Seq C2 exon
GAATCTCCCTCTGTCAAAGACGGCCATTCCAAAGACTCCACTTCAAACAGCAGTGCCATGGGGAAGGAAGGCAAAGATGGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712_MULTIEX2-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.734 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCGTACATGCAGTTTGT
R:
CTCTCAGCACCATCTTTGCCT
Band lengths:
292-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]