GgaINT0124540 @ galGal4
Intron Retention
Gene
ENSGALG00000003712 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr17:6256834-6265525:-
Coord C1 exon
chr17:6265367-6265525
Coord A exon
chr17:6257116-6265366
Coord C2 exon
chr17:6256834-6257115
Length
8251 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TGCATCTCCGCGTCCCGTAGTAC
3' ss Score
5
Exon sequences
Seq C1 exon
CAGGCCTCCTATGCTGCCTCTTCTTTCCCTTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGCCCTTCACCCCCGAGGACACCGGTGCCGCTCAGGGCCTCACTATGTCAGTCTCTAACTCCTTTCTCAACCGGCACAGCTCCTTTCCTGTGCATTCG
Seq A exon
GTGAGTTGCTCTCCGTGCTTCTGTAACCCGTGTGTGTATTTGTGCTGGTGATGAAATGCCCATCTGCAAACCCTGTGCTAATGCTGCCAGTCCTGGGTGAGGTTCTATGGTGGGGGAGGGAAGGTTGAACTCAGTCGTCGGAAGGCAGGTGATGAAAGCGGTGTGCAAATCTTGCTAACTGAAATACAGGGAAAATGTGGCTTTCGTGTCTGTGTCTGTATGGACGTTTGTGTTGGGGCTGGGAGGAGACCTGTCCTGGCTGCTCAGGCACTCTGCTCTGACCTGCACACCCCCCGGGCTGCCGGTGGCACCGCAGTCTTTTTGTTCTGCTGCATAATGCCAGCGATGTGGATGAGCCGATTAAACGCTGCCGTGTGAACCTGGCCTTCAGAGGAATAACGAGATGCCCTCCTTGAAATAGATGGATTTAGCCAAATGCATGGAACAGTGGATACGGCTCCTTAATTTTTTTTTTCCTAGAAAATGGCCTCTACCGCATCATTCATGTCATATCTGCTTGTCTGCATCTCTTCCCATCGCCGTGCTCCCAAACAAGCTCAGGTTTGCTGACAAATGAGCAGAGTTTCTTCTCCTCCAGCACTGACGAGCAGTCAGAAGATAGATAGAACCACAGGAGGAGCTGAAAATTATGTAAAGTGAAATAAGAATAATCTTACAGCACTGCCTAAATCTATGATCGGCTGCTTAAATTAAATGGTAGCAACAACAGAGTGTTAATGTAATGAAATTAAATCTAACCATGGGATTCCAGTGGCTCAACAGTGTGGGAAGTGTTTGCATGTGGAACTATCTGGTTGTGCTCTGATTGCCTGCATGATGACAGCTGAGAACAGACTTTTTTAACAGCAACCTGGATGTTTCGTCAATTACCCTGATTTTGGAGAAGATGTTAGCAGGCAAGACCAGGGAGAGCTCAGAAAGTGCTTTAGTTTAATACTGAATATTTGAAAACTATCCTCCCACTCCACCTCTGCTGTCTTTGCATTTCAACATTTACTCATTCTCTGAAAATGAATGAGTGATGCTGTGTGCTGGGCCTGAAGAAGGAAGTACTCAAGGACGAGTGCGTTACTTCACTTGCAATGAATGAGAGCTGCTGGCTTTCCCTTGGCGTGGGAGAGAGCAGTGGCACAACCTGGGCAGCAGGGAGCTGCGGTGTGCTGAGGTTGGTGCTTAAATAAACGTGTGGAAAATAGTTTTAAAATCCGAACCGAGGCGAAAGCTGTGATCGGTGCAGTTCTCCATTGCACAGGACTGTAATCCAGATAAAAGCATGTCACTGGTTTTGTTTTAATGGAGAGGCTATAAATAAGATACTGTATCGTTCTAAAAATACGTGGGCACTTCCACTTCCAGAAGTGTCCTGATTTAGGTGGCTGCTGCATACTTAACAACTCTGAGCTGTTCTGATCTTGATTCAGACGACGTTATTCTGAATACGTTATTTGATGAAATGCTAAAATTGCATTAGAAAATCCTGCAAGAATTTGGTAAAGGGAAAAGAAGTGGCTGAAGTATGAGTAACAGTGAGAACAGTTGGGCAGCGCTCTGTCAGGTGCACAAAGAGAGTAAACTGAATTAAAAATGGTGACTTCTCCATTAATGCCTTCAAATAATGGTAATCTCATGGTCTCGTTTCTGACAGGCAGAAATGCTATTTTCATTTGACAGCGTCTCTTTGTCTCTGAGCTGCAAAATACCAATGTCCTTACATGCTTCATAGCTGACCCATATAATACTATAACCGTGGTTTATCCCATTTTCCCAATCCCTAATGAGACAGCAATGTGAAACAGCTGTTAAGGCTTGGATCTCTCCCAGGGTGACACCCTGCGTTCAGCACTCGGCCGGACCAGAGCCCTCCCTGCACTCTGCTTCTGGGCATTGCCTGGAGTGACTGTTTCATGCAAGGGCTGCTGTGAGCTGCACTGCACTCCTGTCATTCTCATGTCTTCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCAAGTGAGCGCTGATGGTGAGCAGTAAATGTGGTAAGAGCTGAGCATTAGTTATCCACTGCTCCCAGCAGGGGGGTCGGTGCCAGAGCACACCTTTCCCTACCAGCCAGCTGAGGAGCTGCCCTCCTGCATACCCAGATCAGCAGGGGCAGCCCCTCCTAGCTCTGTGCCAGTCTGTCCACGTGAAGGCAGCAGGAAGGCTTGAGCCTACAGCAGGGTTTGCATGTTAGCCCCCTGTGTCTGTGCACGAAGGGCAAGCTCCTTTCTGTTGATTCACAGGGCTTAAAACCATCGCTTTCAGACAGGGTTCTTTCCTTCTAATGTGTAATTTATGAATTTCTTTTCCAGAATCCTGACTTTTTTTTTCTTTCCCATCAGAGCTGCAGCCACTGCTGCAGTCCAGAAGCCACCACTGTTCTGTCTGCCTGCTGATGATTCTTTTCCCTTCTTTGTGGGAAATTGTCTCACAGGTAATAGCTTGTATTGGATTGAGGCAGGTCTCGAGCGACTGGATCAGACCCTGTAGGTTTGTCAGGTTGAGTCTGGCTTTCATCAGCTCTGATTCACAGCTAGCTTCTGTGGCAGCAAGAGTCACGTTCATAGCATGGGCTGGTACTGTAAGGAAGTACAGCATCATCTTCCCCACTGTCACACCATCAAACCTCGCATTGCTGGGACAACTGGGTTGTACTGTCAGGAGTCATGGTAGGGATTCCCACCTCTTCTGAAAGCAGCTTTCTTTTGTTGGACAGTGGGGAAGGAGGTGCAGTAGGAAAACACCTTCCTCGGTAACTGTCTGCAGTAGTTTTTCTCCAGCAGATCACCTCCATCCCTTCTTACTGTGCAGGCTGAGCTGCTGTCCTCCTCAGCTCCTTGTGCTGTTGGCTGGAGGTGGCTGGGCAGACATCCCAGTGGCAGGAATCAAATCTCCTGGCTTCCTGGCAACTGCGCTGACAGAAGAAATCAGTCAGGAGCTGAGATGCATCGCTATCTCTCTACATGTTTTCCACCAAAGACTGCAGAAAGGCTTTCATTCACTTACAGCTAGGAAGCTTTCTTTGCTGAAACAAGGGGTGCACTTGTTCATCTGAGGTGTGAAACCACCACCAGTGGAAAACTGGCTGTATCCTCCACTGCAGAGAAATGTCTTACCTTGCTCGAAATGCTGCCTTATCTTTTGTTTTCCTTTACATTAAGAACCGCTTCCAGTAAACTTCTGGGGAGCCAAACTGGCCACCCGGTTCCAACAGAAGGTGCAAGTGATTTCCTTAGGAAAGCTCTTAATTCAGCACTTCTGTTTCCACTTGTTCCCACATATCTTCAGCAGATTGAGAAAATGCACAGAAAATTCACAGCGACTGCTCTTCTTTCTTGTGTGTGTGCATTAATGCCTGTTCAGGAAGAGGAGGGTCAGATAAGTGCTTAAAGCTGCTCGCCATTCAGACGTCTGCTCTGCATGTTTTCCCTGCCTTGCTTCTGTTTGTAGCTCAGTTCCACTTGCTGCCCAGACTGCAGATCTGATCTTCACCAGGGGCTGAGTTATTTTGGCTCATGTATTGGTTTGATGGTGGGAGCCACTATGAGACCAGAGGACCATGAGAACGCAGTGTGTTTATTCCTTTCTGTCCCAAGCAGGATTTGGCTCCTTAGTTTGGAACAAAGAGAAGGGGAAAACAAGTTTTGCATCCATGTAACCAGCTCTTGAGCGCTAAGCATTGTTTTGCCTTTCCTGTTTTGTGTTCCTTCTGCATTTACGTTCATTCCCACTGCATGTTGATGTGGGATAACAGTGCTGTTGTGTGCCGGCATCACCTAATCCTGCTTCTGAAAGCCAGTTCCACCTGTGGTTTACATTTGTTTTACACTACCTGTAAGCAGTCCCCCTGGGGGGACCAGGCCATCTATCACAGTTTTTGTGTGGCTGACTTTCTAGGAGCCTTGCCTTCATCTCCATGCTCTGCTGTTGCAAGATCTGTCTGCTAGATATGGTGGTATTGCTTACAAGATAAACAGGAGCTGAAGCTGTAGCTGCGATCAGATTGAGTTCTGGTGGTTTCAGGAGAGATGCACAGTAGCACGGCCAGCAAGTTTTGCAAATGTTTTTATCCCCCCCACCCATTTTCACTGCATTCCAGTTCAGGAGAAGTTTGGATTTGGTGTTTTCTCATACAGAAGCCAGGAGAGCCTTTCCCAAGGGAACAGAAAACCTCGTCCATCCATCTGCTGTGCTGACCACTCTTTAAAAATAGCGAGATGAGCCGTGTGAGCAGGTCAGAGGCTGTGCTGAGAGGCATTCAAGCAGGAGGAGCTGCTGCCTTTCCTGTGGCAGCGCTTGGAGCCGTTCTTTTGGCAGCTTGTGTTTCCACCCATTCATTGTAGGAGCACTTCCTTCCTCATTAGCAAAAGTACCTGGAAGCCCAGAATTGTGTCATGAGATAGGAAGTGTTTTCCAGTAGTTGTCTGTGTAATTATATTCTTAGGGTGTAGCCTGATACAATGCCCAGCATTTTGTGCACATAGCTCTCTCCTGTTAGAATTTGGGCGTGCGGTTCTGGCACGCTGCCCACGTCTCTCTCTTAATAGCATTAGCAGAGGAAACCTAAAAGATTGATCCCTTCCTCCGATAGCTTCGTGTTCTGGGAGTCGGGTGCTCTATCTGATCTGGGAGTGTCTGGTGGGATCGCAGTTAATTTGGCAGCAGTCGGTAGGGTGACAGAGGAGGCTTTGCTGAAAAGGTAAGAACTGTGGCTGCTGATGCTGCAGGTGCTCTGACAGCCATTTGATTGAGATCAGCTCTGAATTTAGGATGCAGATTGATGTTACAATGAGCAGCTGCCTATAAATACCCTGTCTCCCTGTTCCTTGGTCCCTGAGCCTACTGGATGTTGAAGAAATAAGTTTTCTGTTGGAGCGTTTATCTCCTGCCATCTAACCCAAATAAACGTTCCAAACGTCATTGACCTTTGGGGCATCCTGTAACGCCCCTGTTAATGATGGAAGGCTGTTCTGAAACAAACAATCAAAGGCAGCAAATTGAAGATGTTGAAAGATGCCATCTCTGGAAGGGCTGTTTGTGCCACGCTGCTTTCAGTGCGTGTAAACTGTCAGGTCTGGACAAGCTGCCTTCCTGCTGCTCCCAGGAGGTTGCTCGGAGCTCAGAGCACACCTTGTGGAAATACTTCCCAAGTGATGGAGCTTTATATAAATCTGCTTCAGTGAGGAGAGGGGAGAGATCTCTCCTGCTCTCTCTCCTTCTCGGTGCTGGCCATTTGCTGTTGCAGGTCAGAATCCCTCATGACGGGAGGCCAACAGCAGTTGGAAAGAGGAAGATGTCCTTTCTCAGAGGATCTGGTTGCTTTCTAGCTTCTCAAAGATTATTTTGAAGTTCTTCACTGAAAGCAAAGCCATGGAGTTGGAGGTTATGTCAGGGCAGCCATAGCTGAGGCCTTGCTGACCCTGCAAGAACCAGAGAGAAAAAAAGCACTGATTTAGTTTCCAAGATAAACTTTTGCCTTTGATTTTGTGGAGGGCAGAGGACTGGTTTCATTCTGACAGTTGTCTTGAATGGACTCTCCCCTCCCAAAATAAGCCTGGCTTTTATGGGATGATAGGGCTTCTCAGGGCGGTACACCTCCCAGACCCCATGGCAGCAATTCCTGCTGCAGCTGCTGGCCGGGCTGGGCTGGGTGGGCACAGCAGGAATGGTGCCATATGGACCTCATCTCCACCGCAGGGTGTTTTTCCACTTTCAAAGTATGCTGCATTCTTGGCTCTTGTCCCAGCATGGCTGCATAGCTGGAATTCCTGGGCTGCTTGAGCTGGAGGAAGGAGGGGTCTTCCTGGCTGCTTTCTGCAAGATGCAACAGTACAGCGGGCAACAGTAAGTTGAGAACAGCTTGGCTAATTAATGCTAGCACACCAAAGGCTTTTTTGTGCTGTTCCCTTTGCTTAGCAGCGAGCTGAGAGCGGGCCTGCATCATTAAATGATTGTTCGTGGCTCACATTGGATCTCATCACAGATTGCTGAGCACCTTCTTGAGAACCGTTGCAGTGTGTTGGTGGGAGGTGCAGGTGCTCCATCCACTTTGCTCCCGTTCTTTTTCTGGGGGATGAGCCTGGGACTCGGGGCACTGGTTGGCATATTAGCGCCAGTGAGATCATGAAATACCAGGGAGACAGGGCAGGCATAATGAATCTGCTGAGCCAAGATGATGTCATGAGCCCAGAGTCTTACGAGGGATTTAGTGTTTTGTGCCGTGCAAGTGAAAATGAATAAATGGAGAGCATTTATCCAGGCAGAAAGTAAATACAGAGATTAGACTTGTCATTGTTACTGAGGCAGCACCAAAAGCGGATGGTGTCCCTGGAGCCAGGGCTGCTCAGCCATGAAGAAATGGGCAGGAAGGGAGAGGAGCCTGTCTTAGCACTGGTCTCCTTTTAGCCACAGGCATGCGGGAGGGATTTGCATTTTGATTATTCTTCAGTAGTCTTTTAAGCTCTCTTTCCAAAGCGTCTCCCTCTGCTCCTCTGTATTATGGCCCACGAGTTGCGTTGGGTGCACAGGGAGCGCTGCCAGAGCTGCAGCACGGCGGAGGGGAGCTGGAGGATTGAGCTGGTAGAAGGTAAAGTTTGGCCTCTGACCTTTGTTTCCTTTCCAGCTTGTAGTGGAGGAACCTCTGTTCCCAGGCTCGGAGCCTGAGGCAATTCTCAGTTCAGATTTTTAAGCATATATATTGTAGAGAAGGGGAAAAAAATACCACCGCCAAGCTGGGTGCTGCTGCAAGGTGCAGGTGATGGACCGAGCTTTGGTTTTGATCAATTTAATTCAGTTCTCCCGAATTTTCCAGTTTGTTTCCCTTTCTCCTTTTACTCCGTCACTTTTCAGCAAGCTGAGCTGCTTGGGAGCTCTGTAGTGCAGGAAGTTTGTCACCCAGAGGGTGGTGACGCACTGAACAGGCTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCACTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGCAACCCTGCACACAGCAGGGGGTTGGAACTGGATGAGCACTGTGGTCCTTTGCAACCCAGGCCATTCTATGGTTCTATGATATCGCTCCAAGCAACCACCACAGCTGTATTTCAACCTGGGTTTGGGGTAACACAGTTATTCCTTCCATCAGTCCGCAGGGCTACAATGCAGATGTCACTAGTGGCTGAGCTCTACAAGTTGTAAGATAAACTCCCCTCCAGCAGGTTTAGCACCGTTGTCTTTCCATTATTTATTTTTCTGGTGGGTGTCAGCTGTGTTCTGTTCTTGTTTTGGAGTCGTCCTGATGGCAGATCTTCCTAGCACCAGATGTTAAAAGGCAGAGGATTGCTCGTGTTTTTCTTGGCGCAGCATACTCCCACTGCACCCTGCTTAATATTATCTGAACAGTAATCTGATGATTAGGAGAGATGGTGAAATGAAGCTTTATGTAGATGATCTCCTTTCATCTCTTCAGCTGACTCTTGGAGGCACTGCATTAAAGGATTGGTTTGATAAGGAATTCAGGGCTCCTGAGGGCAATTATCATTTTTACTCTCAGTATTTCTCAGATGGAAAGGAGTAAAAGCATCTCCTGCTGTAATCTCCTTTATCCTTCAGCGGAGCTCTGAAGGCACTACCCAGTCACCCCTCACCGGGAGCTGTGTATTCTGGAACAGCCTTGACACAGTAGCTGTTAAATTACAGGGCTGGAGCAAACGGCATCTTAAATTGGGATCCAGTGGAAAATCCCAGCAAAGCAGTAAGCCCTCAGAGTGCTTTTCCCTGCCGAGATGCTTCCAGCACGCTCAGAGCCGTGGTTTCTGTATGCCTTCGCATCCCTTCAGCCAGCCTGGTGCTGTCCAGGTGTGCTCTGTTGCTCACAGCTGCAGCACCAGGCGTCCCTCCGTGCTGACCGCCCCGCTGCCACCATCCTGCCCTGAGCGAGGGCTGCTGTTTGTGGAAGGCCTCACCTCACCACCAAACCTGCCCGCCCAGGTAACGATTCCTGCTCTAACACGTGGAGGAGAAAATAAGGCCGCCTCTGTTCAGGGCTGCCTCTGGGCACAGAGGTGCCTTTGTTAGAATTACCTTGTGCTGTCACCGCTGAGCTGCCGCTGATCTAATCACTTTTTCTCTTGTCTGTCTCTTTCCTTTTCCCACCTCCTTTGTTTTTGTGTTGTGCATCTCCGCGTCCCGTAG
Seq C2 exon
TACAAGTCTGTGTTTAGGTCCTACTCGCAGGACTTTGTGCCTCACAACCAGGTCTCCGTACCTCCTTTCCTGTCTTCTACCTCCTCCTCCTGCTCCACCGCGCCCTTTCCGCCCGTCCACCCGTCTCCGAGCTCTGACCTCGCAGTGCCAGCCACGGCCAGCCCGTCTCCCAGCACTGGGGATGTGCCAAACTCCTCTTCGCAGGAGAGCAGCTTTAACGGGAGTGCTCCTGTCTGCCTTCCTTCTGAAACCTCTCTCACTGATTCTCTGCAGACGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712:ENSGALT00000005891:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.734
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]