MmuINT0131655 @ mm9
Intron Retention
Gene
ENSMUSG00000039844 | Rapgef1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:MGI Symbol;Acc:MGI:104580]
Coordinates
chr2:29565673-29575370:+
Coord C1 exon
chr2:29565673-29565828
Coord A exon
chr2:29565829-29575112
Coord C2 exon
chr2:29575113-29575370
Length
9284 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTTCTGCCTGGGTTCTGTAGTAC
3' ss Score
4.89
Exon sequences
Seq C1 exon
CAGGCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
Seq A exon
GTGAGTCTCCCCTGCTCTTCCTCACTTGGAAACTCGTGAAGTTAGTGCTTGAAGCCTGTGTTCCTGGATGCTGCTGCTGCTGCCTGTCACCAGTGCTGTCCTTCCACAGACCCTGTGTGCCTGCTGCGGAAGGGATCAGAGTACTTGCTTCCCTGGGCCTTGGGGGCTGTGGTTAGGGGTCCGGGAGTGAGGTGTGGGCTGCTCTGTCTGGAGCATGACACTGGCACGGAGCACAGCCACTTCTGCTGTTGTGTTCTGCTCTCCCAGGGGCCTGTGTCTGCACTTAAAAGGGGACAACCCTTTCAGCAAAATCTTGCTAGTATATGCAATGGTGTCAGCGTTTGGAAGCTGATCATGGGATGGATCTCTGGATATGGCAATCACTAGATGGTCCATCCTTTCGTCACACTTCCAAATTTTGTCACTGTAACTCCTTCCATGGGTGTTTTGTTTCCTATTCTAAGAAGGAGCAAAGTGTCCACACTGTGGTCTTCGTTCTCTTGAGTTTAATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACCCATTATGGGTGGGTGGGTATGGGGGACTTTTGCTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAGGGGGGGGGGACAACCCTTATCTAGGAAGCAGGACAGAGAGGAGCAGGTAACCCGATGGGGCTGGGTGGTGGTTGGGTGCTTTTGCTTACCCCACAGCCCCGAGGCCCTGTGGCTTAAAGCAGTAGCCCTTTGTTTGTGCTCGGGACTCAAGTTAGGAGGATGGTATATGAATCTGCCCAGGCAAGCATCTTTGGGAGCTAGGACAGTTGGGCTATTTTGTCACCAGTGTCAGGCTGGTCTAGGTTTGTTGTTGTAGCAGCTGGCAGGCAACAAATGGAAAAGTGTCAGGTGTCCTGACTCAGGGTCAACGTGACAGCCACTCAGTGGGACCACAAGGATCACTGTTTGGGGGGGGGGGGAACCCTGCTCCTGAGGGGAGGACTGCCTGCCACTGACACAGGACAATGGAGAGGGCTACATCAGTCTGTAGACAGCTCAGTAGTGACACAAAAGGAGGCCTGGCTTTCTGGACTCTGCATTTGCCCCAGAGCCAAAGCAGCCACCTTTATTCCTGTGATCCCAACTGAGGCCCAGAGGGAAAAGAATGGAGCCAAGTTCACTCCCTGGAAGCAGCTCGGGCTCAGGTACTGACTTCTCCCTGGGCCTCGGAGTCTTCTTGAGGTCACAGTGTGATTGAGGGAATTGAATCAAGCCATGGGAAGGAAGCACCATATGCGTGGGAAGCAGAGAAGCTGGCACTGCACTGCTGCTTCTCCTGTGCTCGGGAGCGTGGCACTGACTTCAGCCACCCGGGAAAGGCTTGGGTAGGGGACCAGCTTGGCACTTGTCTGATGTCCACCTTTGTCTAGGGTTTGCAGTTCAGTGCCCAGGACCTTCAGGAGAACCTTGTAAGGGTGGAGCCTCCCTTCTCGTGGCTCTCCGCAGTGCTGGGTATATGGGACAGTCTGAGTCACCTCTGCCCTACCACACAGATCACCTCTTCCCCAGAAGGCACCTCTAGCAAGCTCCCTCCACGGACCTTGCAAAGCTTGGTTTCAGGCAGTCCTGGTCCTTGACTGTTAATACACACAAACACACACACCCCTAGGAATTTCTCCTCATTCCTTCTGAGCTGTTAGCAGAGGACTGTGGATGAACTGGGCTGTATGCTATAGAATTGCAGACAAGGGCGTTTCCTTAGGTTTGGGTCTGAGTGTGTCACTTCTGTGGAATGTTGAGGCATCTTACGTTTGTGACTCTGTATTCTTAGCTCCAGCTCCAGGAAAGAATCCCTGCTAAAAGGATAGGATATTTCAGTGAAAGGAAAGAGTCTCCGGAACCGTGCTTGCAGTGTGTGTCAGCTGATAGGTCGAACCCCATGCCGTGATTTAGTGTCTTGCCAGCTCTACACAGTCTCTGGGTAATTCTAAGAGGAGCTTAGACATGGGATTCCACAGTGCGATCAGAATAGGAGTGGGTTAGCTGTAAGGATGAAAAGGGAGGATCACATACAATCAGTAGGGACAGTCAGATAAGCTGAGGGACTGGCTAAAGCAAGGTGTGAGTGACACCCCGAGCTACTCGAGCCTTCGGATGCTGTACCAGGCACTTCTTCCTGTTCTTTCCAGGTTCTGCCGCCCTGTGGGCTGCTTGGGGTGTCTTCATTATCGCCCAGTTCTGGAACTGCACCTCTTTCCTCCCAGCTCCCCACACCTGTGTCCCAGCTGTCCTGAACAATATGAGTTGGGTCGATATGTACACTGCCCTTGAGCAGTAGTGACAGCATCCAGACTCTTGATGGTCACAAGGGTGGTCACTCCCTGTGTATACTGTGGAGTGGGCGGTAGAGAACCGCCTCTCCCATCCCCTAGAGTGTCCTGGGCAGCCTTTCTTTACTAGCACCCATTCCACCCATTCCAAATGCTGCCACCAAGAGACCTGTTGGGATGCTGGATAAGCAAAATAGCTAGCTGATTCCACTTTTAGAGGGTATGTTTAAGTGCCTGTAACGATGCTTATGACTTAAAACAAAAATCTTTGAAATATGAAAGCTAAATGTAGCCTGGTTGTGGTAATGTTCGCCTTTAATCCTAGTATTCCAGAGGAAAAGGCAGGTAGCTCTCTATGAGCTCAAGCCAGCATGGTCTGCAGAGCAAGTTCTAGGACACCCGGGGCTGGCTACACAGAGAAACCCTGTCTTGAATCCCTCACCCACCCACCCCTACCAAAAAAAGAAAGCTAAGTGTCCATCGCCATGGACCCCAGTGTTTGAAAAGGGCTGTACAGCAGCTGCTATCTCGTTCTGGGCCCAGACAATCCTTTCTTTCTCTGAGCTGCTAGATCCAGGCTTTGAGGCATCACACATGTGCCCTTCAGAAGACCTAGGTCTCATATAAACATTTGGCTTCTGTGCTGTGGCCAGAAATGCAGCCGGAGCCTCCTCCTGAGATTTAGGACTGGCCCTTAATTCCACCAGTGTGCCCATGTCTCTCCTGGCCATGAGCTATCTCTGAAAATTCACTCAAAAGCTACCACAGATACCATGGGCATACCACCTCTAAAAACCAAGCCTGAACCAAAGGCGAGAGAGAGTAGGGTAGTAGGGTGGGCAGGAGGATGAAGACAGGCTCAGGCAGCTTGGCTTTGCTCCAGTCACCTTCACTCAGTCCATGCCATCTTGGCCTAAGCAAAGCCAGATCACACACAGGAGAGGAAGGGATGTGGGGTGTGGTGGGGGGGTAAAGCCCTGTAGGCCAGGGCCAGAGAGGTGTTGCTCAGGGCCACTTCCTTGTTTCCTGGGCTTGCCTGAATTCCTGGGTTTCCATGAAAGATTCCCTGCATTGTTAGCATCAGGAGGGTTTCCCTTATGGGGGAGGAAGTACCTGTTCTGTGAAAAGCCACTTTATAGACCGCTGTCTCCTGCCTGGACTTTGCCAGCACATGTCCCAGGTCCCTAGCTACTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGTCGTGCACCACCAGCGCCTGGCTTCCTAGCTACTTTTATGCAGACCCTGAGTTCTAAGCCAGTGTGTAGCAGGTGGTGAGTGAATGTCCTCTCCTGACTGGCCTTACTGTTTGTTCTCTTCTGGTCTGTGTGTGGCTCCACAAACATCCTGTGTACCCCACGTTCATCATCTACACAGCCCCCGAGTCCTTGCACTGCAGCAAAGTCTTTCACCTGGAGCTGGGACAGTTCTCCCTCTGCTGCCTCTGTCATGCTCTGCTTTGCTCCACCAATGCCCTACTTCTGTGGTGAAATGTTCCATCCCTGCAGCACCAGGACAACACCCACATGGTCTTCTGCCGCTCCAGACAGCCCTTGAAATAAACCATGATAACTCACCGTATGCTTATGGAAAGCCCAGGCTGCTGCAGGCCTGCTCAGCTTGAGCGCACAGACAGACTGGACCCTGTACAGCAGCACCTCCCATGCTTCTCCCCCTGCAGAGAGCCCCAGTATATACATTTCCAGCTGAGGGAAGGCAGGGGCAGGACAAGGCTGCTTCACCATGCTGGAGACGACAAGGGGCCAGAAGTCAGTGTTCCTTGCCTTTGGGCCTTCACAAACTCTGCTTCAGAAATAGCCACACACACAGCCCACTAGAATTCTAGGCTTGCTGTTGTCCTCTGCCCATCAGGGCTCTGGGACCAGCCCAAGACACAAGAATATTGCTCTAGCACCCTGCTCCATCTGACACCAGAGTCCAGCTTCCAGGAAGGCCATGTGGTGACATAACCCCCAAGGGCACTGCTCCACAGGTGGCTCTTGCCTTTCTGCCCTTGTCATAGTGCCTGACACTTGTCCAGGACCTTTCTTACAAGTCTGTGATTGAGTATTTTTCCCACCCAGGATATGGAGACACCAAGGCAAAAAAGCGAAGTCATCTGCTCCTAGTGTCAAGCTTGAGCCGGGGATAGGCCCAGATCCATCATGAAGAGTACGTTAGGCTTATGAGCTATTATGTGGCCAGACAAATACTGAGATGCAGTGTAGCTGATCAGAACTGCCTCTAGGCTGGCCTTGCAGAAGTGACTCTCCAACAGGAACAAAGGCCTGTGACACAGGCATCTGCCTCTGAGTCTACCACTTGGCTTTGAAACCCTGCATTTGTCATTTGCAAAATGTAGTTCTTGTGATTAGCAGAAGAGCCTCAAGCAAGAGAGCTGCCCCTAGATAAGACAGCCCAAAAGTAGGCATTGGCAAATGGGATGAGGGGAGCAGGGGAAAGACAAGAGACAAAGGGGGAGTGAGAGCAGTGTTACCCAGGACCCTCCCTGCCCTACCCCCTGGGCATGGTCACATCCCACCCCAAAGGACCATAGCTGTCTCCCCAGGCAACCATTGGGAGCTTTAAAGCTTGACTACATACCTAGCCTGCTGCTGCCAGCCACCATGATAAAGGCTGGTACTCTGGTGCCAGGGCCAGTACTGAGCACAGCACCTAGGGAGAGTCCAAGTCATGAAAGTAACTTCCTGTGACTGTGTTTAGTGGCCTTTTGAAAAAGCAATGTGGTGGCTTATCCATATTTCCTTTTTTGTTTTGTTTTGTTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGCCAAGCAACTCATTCTGTAGACCAGACTGGCCTCAAACTCAAAAGATCCGCTTGTCTCTGCCTCTCAAGTGCTGGGAATAAAGGTGTGTGCCACCACCATCACCACTACCCAGCTCATATCCATATTCCTAAGAATATCCAAAACTTAGCCATCCTGAGGCTGTTCCATGCAGGGATGGCCTGTCTCTAGAGGCTTCCCTCACAGTCAACACACACCGTCCTCTTGCTGTCATCCACCTGGGAGCTGCAGGCTGGGTCAGATTCTCAGTACTGATGTGCAGGCCACCCCTCCCACCCTAGCAGCCTGGCCACCAGAGGAATGAAACAGAGTAGCTGAGAAATAAGCTGCCAAGACAGCACAGGCCCCATCCCCTGGCAACTCTATGCCAGCGTTAACAGAGAAAGTCAGTCTCACTGAAGCTTGGCCAACATCAGGCGGCTCTGCCTTTAATGAATTAGCTTCAAGCAAACAGAGGTTGCCTGTCAGTCTTCACTATCTTTTTTACTCCAAAAATGGGTTGTTCGTCCAGGCATATCTTTTCAGAAGAGCCAACTCTGTTTCCATCTTTCCTGCCTAACAGTTAGGGCTCTGCTCTCTGTATCCATCCCTCGCTTGCTCGACCAGCATCAGAATAGTGCTCTGCTGAGGACACCCCTCCCCCGAGTCAGATCAGGACAGACAGGGGAGGGCGTTTCTCAGATCCAAGTGTGATACAGGCCACCCCATCACAGGGTGTTAAGGAGGTGGGCCTCTGTTCCTTCAGTCAGAAAGATTGCAGCAGCACTTCCTGTCCGTGTAATGAGATGACCCACCACAGCACTCTGAGCATCACTGCCCCGGCCAGCCTCAGTGTCCCTGGCAGATCCCCTGCCTGACACTGGAACCAGTGCCTCTCTCCTGGTACTTACTCTGCCACCACTACCATCTTTCCCCAGAGTCCCCAACCCAAACAGCATCTCTCAGGCTATAAATACAAATTTTTGCTGCACAGGGATCTCAAAACCAAACCAAACACTCCCCAGATCCAAAAATAGACTGGAGGCTGCTTTGGGGCTGTGAGGTGACCATCTGTGCCCTTCTCCCAACCCCGGGGATGAGCGTGACCCTGGAGGGTCTGACAGCCAGGGCCTGTGGAAACAGCCACCCAGAGCAGCCCAGAGCAGCGGTGCTTTATGGTGATTGGAGAACCTTCCCCGGCTCCTCCCACCCTTGCAAAGGTACTTTTCAAGTTTGGCTCTTGTCCCAGCACGACTGCATAGCTGGAATGCCTGAGGAATCTAGGAGCAGGGGCTGGAAGGGAGGGGAACCCAGGCCCCTGTCCCAGACACACTGCTCCAGCCTCTTCCTGTCCATTGAGTCATCCCACTCACAGCTGAGCTGCTGTGGTACAGGCCTGGCAGTGGTCTGCACACCTTAATTAATAATAACATCAGACAATGTGTGACACCCGTCAGCCCAGCCTGAGCAACTTATCATCAAAGGATCCTCTCAAGAAATAAAACAGCAGCTGGAGAGGTGGCTCAGCAGTTAGAATACTTGTTGCTTTTGCAAAATACCTGGGTTGGAATCCCAATATCCACATGGTGGCTCACCACTGTCCATAGCTCCAGGGAATCCAACGCCCTCTCCTGGCCCTGCAGGCAAACACTCATACATATAAAATAAATCAAAAATAAACCAAAAAAAAAAAAGAAACTGTTTAAGATAAATATTTAAGTGAGTACATAAAACCAATATCCAGGTGTAGTGGTACACAGCTGCACTCATGAGACTGAGACAAGATTACAGGTTTGAGGCCAGACTGGCCTACATAGCCAGACCCTGTTTCAAAAGGAAAATTACACCACTGGTGGCTGACAAGATAGCTCAGTAGTAGCCAGGCATGGTGGCTCACACCTTTATTCTAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGTGAGTTCCAGACAGGCCTAGTGTGCATAGTGAGTTCCAGGCCATTGAAGACTGTATAGTGAGCTCCCCATCCCTCCACCTCAGAAAACAAGATGGCTCAGCAGATAAAGGTGCAAGGCTGACAACCTGATTTGCATCCCCAGGGCCCATGTGAGAAGGAGAAACCAGTTCCGACCTCCAAACACGCACAGTGGCAGCACACTCATACACACAGAGAAGTAAATGCATGCAGTTTTAAGTTCTTTTTTAAATTATGGTAAATTATTTTCTAAACATCTCTTGATCCAGCCAGTTGTGTTGCCTCCTGTGCAGAACCCCCCCCCCCCCGCTGTTACGGGGTAGAGAAGGACAGCTAGTGTGGGATATGGGCCCCTTGCAGTAGCCATGCTGAGCACTAGCAGGACACTGTTACACTGACGGCTACAACTATTCAATGAGAAAATGATTGTCCTTTTCACCCCATGGGCGTGGGCTGACTTTTGAGACAAGGTTTCCTGTATACCCCTGGTTGGCCTGAAACTCACTCTGTAGACCAGCTGATCCTGAAACACAGAGATCCACCTGCCTCTGCCTCCTGAGTACTGGGATTAAAGATGTATGCCACCATGCCCGGCACAATAAATGTATAACCCAGGCTAGCCTCAAACTAGTGATTTTCCTATCTCAACCTCCTTTAGTAAATCTTACTGCCATGTGCTACCACAACTAGCTCACTCCATTTTAAAGATGAAGACACTCATCCACAAGAACTTATTTGTCCAAAGTCACACAGATGGAACAGTAACAAGGTATAGATGCCTTGGATGGGGAAAGGGAAGTTGGGGGGATCTGCAGCCTGTGTTGAGGATCACAGCTGACCCAGATTCAGAGAGAATGAGACAGCTCTGCCGGCTAGGCACCACGGCACCCTACAACAGAGCCAGAAGCTGGACGGCATGGGGTCAGTACAGCCTGTGCTGGGTGGGCATTTCTGAGTCAAACCCTAACATCTCCAATTAGTTTAAAACTTCATTTCTCCTTCCTTTTTCTTATTTCCGTGGGTTCTGAAACTCCTGTACCACAGAAAAGTCCAGAGCACTTGAGTGAGCCGTGTGTATGTTTCAGTTGGCACCTGTGATGGGTACATGAAGACGACAGGAAGACCAAGTGTGCCTCCTCACTGTCCTTCCAGGCCCTGTGGTGGTTAGCAGTTTGCTGGCAAGCCTCCAGCAGGCATGATAGCATCAAACACCTCTCAGCTTGGGAACTTGGAGCGTTCTCCTTGGGCCTCAGAAGCTATGAAGACTTAGGGGCACCTCTTAGTCTGCCATCTGACGTTTCTATCAAATGAGAAGTAGAGGAGTCAAGCCTATGGCTCTGGGGTGACATCAGAAGGGGAAGGGAGATGCTGAAACTCCCCAAGTCATTGTTGGGCTCCTGCCCTTTTCTAAAAGGCCTGAGGTGCATCTGATATCTAAAGGGCGGTCTGTCTGTCTGTTAAGGGGTAAGCTAAAGTTGTCCAGAAGATCCAGATGAATAAAGGTGCCTTGGAGTTCAGTTCTGAGGCTCCTAAGACATGGGGTAGTAGAGGTTCGTTTGCACATGTGGTGATCAGCACAGAGAGTGGGAGGAAGTATAGCCTCCTTTCAGATAGTGCCATCAGCCTGCAGGTCCCTTTCTGAAAGCAGTATAGTCATGAAAGTCTGTAAGGGGTTGTCTGGCATTCTGGCATGACCAACAGCCCCCACTAGGAAAGACAGGACAACCAGGCCATGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGTGGATTTCTGAGTTCAAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAACCCTATCTCAAAAAACAAAACCAAAAAAAGAAAAAAAGGAAAGATAGGACACACCAGCCATGCTGAGCCTCAGTTAACCTAACCACCTTTTCTCTTGTCTGTTTTCTCCTTCCCACATTCTTGTTTGTGTGTTTTCTGCCTGGGTTCTGTAG
Seq C2 exon
TACAAATCTGTGTTTAGGTCTTACTCCCAGGACTTCATGCCTCACCACCAAGCCTCCGTCCAACCTTTCCTTCCGCCTACCTCCTCTTCCTCTCCACATTTCCCACCTGTCCACACGTCCCAGAGCTCGGACTTAGCGGTGCCCACCGTAAGCAGTCCGCCTCCCAGCACCGTGGACGGGCCTCTCTCGTCTTCTCAGGACAGCAGCTTTCATGGGAACCCTGTCCGCCTTCCTTCCGAAACCTCTTTCACTGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039844-Rapgef1:NM_001039087:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.795
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: