BtaINT0122295 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101747557-101759429:-
Coord C1 exon
chr11:101759271-101759429
Coord A exon
chr11:101747830-101759270
Coord C2 exon
chr11:101747557-101747829
Length
11441 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GTTCCACTCTGACTCTGTAGTAC
3' ss Score
5.14
Exon sequences
Seq C1 exon
CAGGCCTCCTGTGCTGCTTCTTCCTTCTCCTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCATCAGTGTGTCCGTCTCTAACTCCTTTCTCAGCCGGCACGGCAGCTTACCTGTGCCCTCG
Seq A exon
GTGAGTCGCTCCCTGCACTCGCTACCGGGAACCTGGGGAGCGAGACCTTTCCCTCGTGGCCTATGCCTCCCGACATGCATGCTGCTGCCTGTCGCCGGCTCCAGCCCTCCACAGACCCCAGACAGGAAAGGTGGCCCGAAGGTTGGTGAGAGTGGCTGGGGCGGATTGGGGTGGGACTCCTGGTGGCCACGCTCAGGGCATCATCACTCAGACGTAAACTGGCAGAGATGTTTTGGCCTTTTTATTCTGTTCTCCCACTGGGCATTGGGTCAGCCCTGTAGTGTTCTGTGTTTAAAAAGGAGTATTCCTCACGTAGGAAGCAGAGCAGGCTGTACCCAGTATGATGGAGCTGAAGTTAAGAGAGCTGTGTCAGTTAGCTTTCACTACCTCTTGCTAATGTAACAAATCACCCCAAAACCTGTGGCTTAAAGAGCAGTAACCGTTTGTCCTTGCCAGAAAGTGAAAGTTGCTCAGTTGTGTCTGACTCTTTGTGACCCCATGGACTATACAGTCCATGGAATTCTCCAGGCCAGAATACTGGAATGGGTAGCCTTTCCCCTCTCCGGGGGATCTTCCTAACCCAGGGATCAAACCTAGGTCTCCTGCATTGCAGGTGGATTCTTTACCAGGTGAGCCACCAGGGAAGCCTTGCCTAGGACACAGCTTAGCAGCACAGCTGTGCTGATCGGGACAGGCCTGGCTGCCAAGGGCTGGACTTGCCCACATCCCTGGCACCCCAGCGGGGGCTGGTCTGGCAGTGACCCTCCTGACCTGTCTGCCACATCAGGCCAGCCTGGGCTTGTTCACAGGGCAGTTGGCTGGGCTCCAGGAAGACAGATGGATACTTGGAGGCATCATAAGGCCTCATCGTAGGGCTGGCATGCGTCCTCTGGGTCAGGCCCCAGGCAGCGCAGCCTGGGGAGGACAGTGGACTCGACCTCTGCTGGGCGGGCCCTTCCGCAGGTCACCCTGTGGAGGTGGGGCGGCAGGAGGAGGGCTGGCCTGCTGTCTGCAGATACACATGCGCTGACACCTCGGAGGCTGCGCGGGTCTGCCGTCTTCCTCTGGGGTCTGCATCTGTTCAAGAAGCTGACCGCCCGCACCTCCTGCTGACTCTGTCTAGTGGCACCCTGGGTGTCGGCGCTCAGGAAAGGACTCTCCAAGGGAGCTCGGTGGACCTGTCCCAAGGTGACTCACATCCTCCCAGGCCTCAAGTTCAGTCCTCTAGGGTGGCACTTTTCCTTGCCTCCTCTTCTGTGAGTGGGAGGATTAAGTAAAATCACAAGAAACTGCCAGGCAGGTAGTAAGCTTGGCACGTCTGTCATTATTGCTGTTGTCTTAGAGTTCTGGGTTCTAGTCTTGGCTTGTTCTGATCCTGTGCATGAGTGCCTGGGCAGATGTCTTCACTTGCTTGGACTTCCTTTGCCCTCTTGAATGACCGGGTTGACCTGGTGACATCAGAGCCCTCTCCAAGCTTGGGTTCCCAGTGTGGTTTTGTCTGTTCTCCATATTTGGGAGCCACCAGCGCCCAGGTGAAGCTGGTCCTCCCCATTGAGGGGACCTTGGGATGCAGTCTTCCCTTCAGCTCCCAGACCTCGCCGGGCAAGGCAGGACCACTCCCCACCCCTCCCTGGCTCTGGTGCACAGACGACCTCTGTTTCCTCAGCAGCCACCTCTGGCAGCTCTTTTCACAAATCTTGCAAAACTTGGCCTTGAGACAATCCTAGGTCTTGATGTGGGTTTTTTTTTTTTTTTTCCCCTCTCTTCTGCGAACAGAAAGTAAGTGTGAGTTTTCCTAAGAATGTCTACAACATCCCTTTTGAATAGTTTGGGGAGGAGACTGAATGAACAGGACTGTATACTATAGAATTAAAGAGAACTCGAGGACATTTTAGATTAAGCTGGGGTATGAGTATGTCCTAGTTTTCCCCTCAGCACACAGAGGAGTCTTACAGCATCCTGCATCTCCGCACCAGCTCCACAGAGGAGCCTGAGGGGAGTGAGCTAAGAAGGGTGCTTTCGTTCACTTGAAGCGAAGCCCCTCCAGGCCTCAAGAGATGTTAGTAATGGCCTAAATATATGGAATACTTGACATCTGAAATGCAGAAACCCCAGAGAAATTATTTAGCTGTAATACCAGTACTTTTTTCATGTATATTCTCTGCTTACATTTTGAGATGAGCCCCAGACAGAGGGCTTTGATGTGCTCTTGGAGCAGCGCTTCATTGCCAAATGTCTTTGTTCCTTCATCCCTGGACTTGTGTCATCAGTCCAGCATGGAATTCCCAAGAGCTGCCTCATAGGAAAATAGCAGGTGCCAAATATGAAGTTCTTTGCCCAGTGGCCTGTTGCTTCTGCCTTGTAACAGGAATTTGGAAACCTTGCCGAGGGAACTGCAGAGCAGTGAGCCTGCACTGGTCGATTTAACATGAAGGAGGTGCTGCAGAAGCATTCCTAGTCACTTTTCTGGGATCCCACGGAAGATTTAATTTGCTAAGAACGGAGCTACTCCCGATGGGGGTCAGGCAGCCAGAAGGATCCAGTGCAAGCAGGATGGCCCGTCGTCCTTGAGAAGCCCGTGCAAGGGAGTAGGCAGAATGAGTCAAGCGGAAAGGAGACTCCGGCTCAGGCAGGGCGTGGGCAGCAGGGTGAGAGTCACAGACGTCTGGGGAAGGCTGTGGGCAGTGGGGGCAGGATGGTGTCAGGAGGGGGCGCCTGAGTTGTGGTCTGATGGCCAGTTAACGTTTCAGGGAAATGAAGGTCAGTGAGGGACCTGCCTGAAGATGGGGAGTAGAAGCTTGTCTCAAGTATAAACTCTCAGGACTGAGGTCCAGGGAGAGCGGCCGGAGGGGTAGCAACAGCCAGCCCTTCACACAACCTGCCCCTCGGTCGCAACCTGCTGCTTTCTCCTGGGTGCTGCCCTCTGGGCTTGGGCCCAGCCTTGACCGCTCTTTCCCCACTTGTGCCCAGACGTGTCCTGCTGCCGTTCCTGGGAGGTGCCCACCCTCCTCTTCACAATCTTTGTCTGGGTCTGCTTAGCCCCCCGGTCCACAGACCCCCTTTCCTTCCCGGCATGCGCTATGATTCTAGGAGACTTGAACAGCTGCTCAGACATGTGGCATCTGGGACATTAAGACCAGTTTGGTAGAAGAAGGTGTTCAGGGAAATGATGAGCTACTGTGAGGCCAGAACGATGTGGAGAGCTAGGTGCAGCCACCCCCGGGAATGGGCGGCCGGCCCCCTCGTGCCTGTTCGAATTCCACCAGGCCTTGCAGTATGCCTGCCCCTTGGCGCACGGGTAAGTGTTTGAGGGAGGCCCACTGAGGTACACCTCTCAGATGTGGCGCTGGCGTCCTCCTCCCACCCCTGGATTCTCCTCCATCACTCGTACCCCTGGCCGTCTGCCCTGTCCTCACTGCGGCCTTGCCCATGCTGACTGCCTGACTCCCACCTCCCCCCGAACTCCCGTCCCTCCAGCCCCAGTCCTTCTCTCACCACCCTGGATTCCCACTGCTGTTCCCACTGTGGCCCTTCTTGGGCTTGCACTTTCTCTATTCTGAACCCTAGTGGTGTGAAATCTTGGAAGCTCTGAGTTGGGTCCATATTCACTTTACCCTTGACCAGAATATTATTGGGAACCTGTTAATAACCATTAGGGTTTCCAGTCCTCTGGACATTATAACACTGATGTTACAAAAGCCACCTCCCTCTATGCCTATTCTTTCTTGGCTCACTGATATTAACTGTCACCAAGAGATATAGCTGGATGCTAGGACTCTGTTGAAATATTTTCTTTACTATCTTGGCTTCCAAAATGATTCTGGAGAATCAAAACTTCTAGAAGACCCAGAAGAAGAACTTCAGAAATACCCATAATGACTGTCTTCTGTTTTTAAAAATCTCTCGGGTAAGAAAGTCGTGTGTGTCCTGTTGAGGACTTCAGTTTAAATGGGGACGCTGGGTAGAGCTGCTGGCCGTGATCCTCCGAGAGCCGGGCCAGGCTTCCACACTGTAGCACACGGGCCCTTCTAGGACCCTGCCCAGGAGAGGCTTACTCTGTCCGCCCCCTCCTCGGTCTCCTGTCACCAGCCATCACTGAGACAAAGGGATCTGACAGGTGGAAAGGCCAAACAGAGAAGGAGAGGGAGACAGGAAGGAAGATTGTGGACCACAGCAGGTGTGCCCTCCTGCTGGTTAAGTAGGCCCCCGCCGTCCCCTGTGTCTTCCTGACATCTTTTCCTCACTGGCTTCCTGCCTGCTCAGAGCAAACTTACTCTGAGAGAAGAGGGAGGGTCCGTGGGCAGTACCAGGGGCCCAGGGCAGGCAGGTTCATCTCTGAGCTGACCTCTCTTGGGCTCTTTGTTCCGTCGGCCTGCCCGACCTCCCAGGGTTTCCTAGAGAGCGGCCCCCAGCACTGTCAGCAGCGAGGAAAGCAGGGCTATTTTGCCACCCGCGCGGGAGTCTTTGCAGGCCCCTCTGAGTCTGGCCTGAGATCTTCGCAGGCTCTTCCAGTCTGCTGGGCCGTTGAAGTGCGATGTGGCTCCTCCAAAACGTTCCCCCTGTGCCTTTTTGCCCTTCCTCAACAACCAGGTGCCCGTGTAGCCAGCGTATCCCTGAAGTGTGACTGAGTTTACTGCTGCTCCGAGCCCAGACACAGCCTTGTGAGAAGGAGGCATGGGCAGGCCAGCACTCCTGTGGGTTCCTAACCCCTTCAGGTAGAGGTAGCAGCCTGGCTCTGTGTCAGGCCCCCACGCTGAGCCCAGGGTGAGCCTGCCTTGCCTGCGTGGACGCCCAAAGGCCAGGGACCGGGGCCCAGGGACCTTGTCCTGGGGGCTCCCAAAGCAGCTGCTCTGCCCCTGCTGCTTCTGTCCCTCCTAAAGACTCCCCGACTCTTGTCAGTGCTCATGTCATTGTGGACAGCTCTTGCAGACTAGCTTCAGACAGGAACTTCCCTGCCTCCCCTCGCTGATGACGGCTGACCTACTGTAGTCCGTGACAGTCCTGCTGGTCAGGGACCACAAGGCCCCCGGGTCCTTGGGAATGTCCTGTGTGACGTGACCCCTAAGGGGTGCTGGCTACACGCTGACGGTTGCCTTTACTCTTGTGATTTCAGGCTGCTTGGCAACTTGTCAGGGGCTCTTCTTCCTGTTCTGTGATGGAATGTTTACCCATGTTCTGGAGATGGAGACACCAGACTAGAGAAGCTGAACCACTAGATAAGAGTTTTAAGTCAGCTGAGGTTAGAATCAGATCCCCATCATGAAAAGTACAGTGTCAGGTTGATGTCTATGAATTGTTCAATGGCCAGTAAGCATTGAGACCCGAGAAGGTTCAGGAGAAAGAAAAGCCTGTGCGCGGACATCAAGAGACGCGCTTTCTTTGTCCTGACAGTGTTCTGATGCAGGACAGAGTGTAGCCGCAGGCTCTCCATAGAGCGCTAAGAGTAGGTGTGAGTTAGAGCCCCTGTTGTGCTGCGTAAAGCCACACTGAGTGAAAAATAGTGGAGCTGTATTTCTAGAACTAAATTCAGATCACTGTGGAATCCGTACTAAATCTTCCTATGAAGAGTTGACGTTATCGAGGTTAATGTTTCTTTCTTTAATGCAGAAAAGCATTTCTTAAAACGATGTTATTTGTTTGCCAGTGCCGGGTCTCCGTGGCTGCAGTGAGCGGGTCCTCTCTCGATGTGCTCGCGCTCCTCACTGCAGTGGCTTCTCTCGTCGCGCTGGCTCTAGCACGCACGGGCTTCAGCAGTGGTGGTGCGTGGGCTCCGCAGCTGTGGTTCCCGGGCTCTAGAGCATGGGCTTCGTTGCTCTGCAGCGTGTGGGGTCTTCCTGGAGCAGGGGTAGAGCTTCTGTCTCCTGTACTGGCAGGCAGATTCTTTATCACTGAGCCACCAGGGAAGCCCGAAGCTTAATATTTAAGGAATATACAGAGCCTCCCAAGATGTATTGGAGGTTCTCACAAAAATGTAATTAGCCATGAAACCATTGGCCAAAAATGTAGTGTGTTTCAAGGAAGATCTTGTGATTCAAATGCAAAAGTATGAAACATGAGAGAAAACGTAGTAAATTCCTGCTTTCACTTGTCCTAAAATTCTCCTGAGCAGAACATTTTTGTTCTTCTACATCCTTTGTTGTAGAATTACAAATTAGAATTTTAAATGAATTTAAAGAGAGAAGGCATTTTTTGGACACACGTGACGTCAGTGTCGCCTTCCTTGGGTGAGCTGGGCGCTGGCTCCTTGCTCCCACAACAGGACCCACAGCAGTGTCTCTCCTCGCCTTGAGCACAGGAGCTCTCAGCATCGGCCTCCGACCCTGCCACTGGGCTTCAGAAACTCTGCTTCTGACATTATCTAACATGTAATAGTTAAAAATTAACACAGGCACCTCAAAGAGGGAAGTTCTCTCTGGGCCTAAGACAGCTTTTGTAAACACATAGTTAACTGGGCCCAGGAAGGAGAGAGGAGACAGGCAGTCTTGTAGCTAGTTTGCCCCATGGAGTGAGAAGAACCATTATCAAGGGTCCTTCCTGGTGACCTCGGAAGGGTCATGTCCCATCTGAGAACCGAATAAGATGTGGTTGTTTCCAGGAGATCCCTCCCCAGGAAATCGAGGCTGTGTGTTTTGCGTCGGCTAAAAGCTTTACTTCCTTCCAAGAGAAATAACTGAGGCCCATATTGTGCGGACACTCGCAGGCCCTGTTTGAAGGCCGCTTCCGCTGAGCCCAGGACTGGCCCTGGGCTGTGGTTCCCACCGGCTCACTATAGGAGAAGAAAGCCCAAACCACCCTCGAATTACAGCTCCTTTGAGTATGTTTTCTCCCAAATGATGGATAAAACTTTAAGCCCCCAAACAAGCTGTCCAAGAGCTTATCTGTTTTCACCAAGTAGTGTTCAAAAACCCTGAAGTCACGAGCCTTGCTGGAGCCAAGGGTGTACAGTAATGACTGATCTCTGGCGACTTCTTCACTTCCCGAGCACTTGGCGGCCACAGTCAGTCCATTCACTCAGATGAGTGCATTTCCCATGATTGGCAGGGCTGGACGTTCTCTAGAGCGTGGAGCCCGAGTCACCATGGAGTCGCTGTGATTGGCAGGGCTGGATGTTCTTCAGAGCTTGGGGCCTGCCCGAGTCACCCTGGAGTAGCCGTAACGGTCAAGGTCCTCTGGCCTACAGCTCCAGCCCTCGGCTGTTGGCACGCTGACCGCCTTCTCTGGGCCCCGGTCTTCTGATAGTCACAGGGATTAGATGAAATATCTGTCATGTTGAGGAATCAGAGGTTTTCTTATGAAGATTACTTTCCTGCTTTCTTGCCAACAGCGCAGGGCCTGTCCCTAGTCATCTTTCATGCCAGGATATAATGGAAAGGAAGTGGCACTGAAACTGGTGCCTGGCCAGCTTCAGGAAGCTCTGCTTACCTAGCACATGACTGGCCACCCATCAAGGCGGTCTCCCTCCTCCTTTACACCCAGAAGACTCTTGGTGGTTCTTTCAGCTGTGTAGTTCAAAGAGTCAGTGGCTCCTGTGTCTCTCACGAGGGTAAACCTTTGCTCTACGTATCTGACGTGTATGTCAGGCCTTGGCTCACTGCCTCTTGCAGGCTGGTCATCACTCGGGAGGTGTCCGAGCGAAGTGAGTAGACCGGACCCTGCAGAGCTGCAGGATCGCAAACTTAGGGCCTGTCACATGCCCAGAGTGCTCCCTGAGTGTGAGGGGGCTGTCCCAGCAGCATCTCTGTCGAGCTGAGCCCAGCTGTGGCTTACTAGGTCCATGGCTGCCCTTCCAGCCTATCTCTGCATCTTCGTAAGGAGGATTATAATTTGGTGCAGAGTAAATGAGGTGGTTCACATAAAACCTTCAGCACCTCATCTGCCCAGCAAGACACCTTCAGTGAGAATAGCTGCCATCCCCACCATCACAAGATGGCTCTTGCTGGCACTTTTGACTGTGAGATCAGGGCTGACGTGGGGGGCCAGGTGCCCCTTCTCCCCAGAAGTCATTCGAGCCCCCATAGATCTCCCGCAGAAACATGCCGCCTCCCAACAGGCAGCTCGTCCCATTATAGACTCCTGGGCCCAGACAGTCTTACTCCAGCTATAAATAAAAATTCCTGCCGCGGAGCGCAGCAGCAAAGCCCGGCACCAGCCAGATCCTAAAATAGACTCCAGGCTGTGGTGAAGGCGTGTTTTCTGCTCCATGGCCAGCCCTGCGTTCTCCCTGCCCTTGTGAAATAAATGTGATCTTAAAGGGCCTGGAAACACTGCTTGGGGGAGGCGGTGGATACTGGATTTGTTGACTGCAGTATGGGCATGAGCCTGCAGGGCCAGGGAGGGGCCGGCCTGGTGGTGATTAGAGAGCAGCCCTGTGTCTCCCCCGCACCCCCTACCACCACCGCCGCCCCCTGAAGGTGATGTTCAGGCCTGGCTGCTGTCCCATAGGACCGCATAGCTAGAATACCAGAGCTGAGCCCAGGCAGCCTGGTTGTTGCTGAGGGAAGGAGGGCAGAGCAGCCAGCCGCTCTGTCCCAGAGACACGCACCCTCCTTCCCTTCTCCCTGGCGGCCGCCCCTCTCCTCTGCCGTCCTCACCCGCGGTGGCTTCCCCTGCGAACCCACACCTGCACAGCCCAGGCAGCTTGTCCACGACCCCTTGCACCCGCTGTTGAGACACTGCTGAGTCAGGCAACGTTCTGGGCACCTTGGTTAATAACAGTGTTAGGAGCCATTCCTAAGCATTCCCTCATTCAGTAAGTATGTACTGAGTTAATTAAACGCCTTGGCTCTGTTTTTCGAGGCGCTCCTGAGGGTATTTTGGAGGGCAGGAGAGGAGAGCTGACGCTGATTGCTTGTCACCCAGCCAAACTTACAGGGCGTCTCAGTAAATGCACACAGAGCCCCTGGGAGGGAAGAACTGCTGTTTCCATCCCCGCTTTAAAGAGGAGGAGACTGAGGCTCCAAAACTCACAACCCCTGCCCGAGGTCACACAAGTAGAGCTCAGGACCCGAGTGCAGGTCTGTATGACTTGCGCACGTGCCCTCAGCAGTTATCTCAGCTTCCAGAAAAGGCACCCACTGTGTGTGTGTGTATGTGCACGTGCACGCGTGTGTATAAGTTAGGGCTTGGTTACTGCAGGGCCCACTCCAGTGCTCTGTGCGTTTTCATGCTTCAGGGGTGTGGGGGTGTCAGTGAGCACACGTCAGGACCCCAGAGCCAGCATTTGGCCTGGTTCGTTGTGGCTGCTATAACAGATTACTGCAGCCTGGGTGGCTTATAACAGCAAGTGTGTTTCTCGCGGTTCCGGAGGCCAGCATGGTTGGGTGAGGCCCTCTCCCTGGTCACGGACTTTTCTTGGTCCTCACATGGCAGAGGGTAGAGCCTCTTTTCTGTAGCACAGACCCTAGCATCTGGTGGGGTGAGGATTTCAACATACAAATTTGGAGGGGCACTGATGTTCCGACCATAGCAGCACTGTAGGTGAACTGTGAGCGAGGCAGAGTCGTGGCCCAGGGAAAGGCCCCTGTGTGTGGGAGCGAGTGTCCGGCAGGCCTGGGGGCCGGACTCCTGCGAGAGTCTGCAGCCACTGCCTCAGCGCAGCCAGCGCAGGGGTCCCTCAGACGGTCTCCCGGGACTGGCCGGGCCGTCCCCTCCCTCGGCTGATGCACTTCACTCGTGGTCTCCTCTGGGCACCTTCTCAGCCACTGAGAGCGCCTCCCTGTGGCTGTGGGGGGAGCATCCTCCAGAGGTGAGACAGCCCCCAAAGCCAGACTCGCCACCCACAGCAAGGCCCTGGCTTGGACGGCTGCTCTGAGAGGTCAGATGGAAGGCGTCGGCTGCCGGCCCTGGAGAGGGTGCCCCGTGGAAGCTCAGGCCCCACGGCCCTGGGGAGAGGACAGCTGAGCCAGGGCTCCACCGCCGCGGGCTTCTTCCCAAAGAAGGCATGTGGACAGATGAGACCGACAGGAACCCAGGCCTCATTGTCATGCCGTGCTTCTTCACTCGTTCCCCTGTGTCTGGGTTGGCCTTGAGCTTCTGAGTTAGATGGGAGTAAGATGTGTGGGGACAGTCAGTTTCTAGGCAGGTACCCTGGGTCGGATATAAATCAACAGCCATGGGGCTCGTGGCCTCACCAAGGAGCAGGGGAGCTTTGAACTGTGATCCACAGCCCGAGGAGGCTGATGAGGGGCAGAGGGGAGTGTGACTGTCCCTTGTGTGACAGCAGCTCTCCCCCCAGGTTGAAGTGTAGCTTTAGAGAAACGCTTAAAGTGATGAGTGGCTTTAGCCTCTCATTAGTTTAATTCTTCATTTCCTCTTGCTTCATGGATTTCAAAAATCCTGTGCCGGGTATTCCCTGGCAGTCCAGTGGTTAGGACTCCTTGCTTTCACTGCCAGGGGTCCAGGTTTAACCCCTGATCAGGGAACTAAGATCCCACACGCCTCACAAAAAAAAAAAATCCTATGCCAACATGTAGAGAGGACAGCTGAGCGAGCGGTGTGCCTGTTTGTTTTGGGGGGCGGGCTTTTGTCAAGTTCCAGCCCCTCATGGTGGGAAGTGAGCCTGGCGGGGGCTCCAAACTCAGCCCCTGCTGCACATTCGTCCCCGTTTCTCAAGGACAGTGGGCAGGCCTGGCCACCCCAGGACTGTTAGCTGGTGGTCTCCAACCCTCCTTCCACAGCACAGCCCAGGCCCAAGTCTGTGCTCCCAGGCTCTGCTCTCTGCCCAGCCTGATCTCAGGCTTTTCTTTCATGATGGGACCCTCGGAGAATGGAGCCTTGCAGTCCTAAAGGGGGCGTCAGAGGCATTGCACTTGGTCTGTTAAAGAAAGAAAGAAAAAAGATGGACAGAAAGGGAAATGTACTCATAAATTTTTAGTGTTTTGGGAGCACAATTCTTTCAACCATGTTTAAGGCTTATCACTTCCCTTCCAAAAGGATTTGAAGTGACTACAATATTGAAAAGGCTTGCAGTATTTGACTTTCAAGAACTAAAATCAGAGAGATTCATCAAAAAAAGAGTCAAAATGAGTAAATGTGACCAGGTATCTGCATACGCTCGGTTCAGTCATGAGGTTCCTGGAAGGACAGTCGGCATAGATGGGGCTGCATAGGTTCAATTTTCTGACAGAGGATGGGACCCCCCCCACCTCCACAGTGTGGGATGGGGGCTTGCTCTCCTTGGGGGGGCACCGCGTCCCGCCGTGTAGACGCTGAGGACGGCTCTGGGTGGTCTTCAGGCTCTTCTCAAGGGGCTGCCGAGCCAGGGTTGGGGGACCTCCAGCCAGAGGGCCGCAGGGGTGGTTTGGCCTGAGTGGTGTCCTCGTTCGAAAGACCATGATCGGCCCGTCACGACTCAGCCGAGTTAATCTAACAACTTTTTCTCTTGTCTGTTTTCCTCTCCCCTCCTCTCGTGTTCGTGTCTGTGTTCCACTCTGACTCTGTAG
Seq C2 exon
TACAAGTCCGTGTTTAGGTCCTACTCGCAGGATTTCGTGCCTCACAGCCAAGCTTCCGTCCAGCCTTTCCTTCCGTCTACCTCCTCTTCCTCTCCACACTTCCCACCTGTCCACCAGTATCAGAGCTCTGACTTAGCCGTGCCGCCCGTGGCCAGTCTGCCTCCCAGCACCCTGGACGGGCCTCTCTCATCTTCTCAGGAGAGCAGCTTTCACGGGAACACTGTCTGCCTTCCTTCCGAAACCTCTTTCACTGACTCGCCCCAGACGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791:ENSBTAT00000032663:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development