GgaEX0004872 @ galGal4
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr17:6253988-6267621:-
Coord C1 exon
chr17:6267419-6267621
Coord A exon
chr17:6265367-6265522
Coord C2 exon
chr17:6253988-6254076
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCCCTGTTCAGCAGGCC
3' ss Score
7.3
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TGATGGCGTACATGCAGTTTGTAGAGGACTACTCGGAGCCACAGCCATCTATGTTCTACCAGACCCCTCAGAACGAGCACATCTACCAGCAGAAGAACAAGCACCTCATGGAGGTCTACGGCTTCAACGACTCCTTTATCAGCTTAGACCCTTCTCAAGATCTGGCCCCCCCTCCTGCTCTCCCACCGAAGCAGCGACAGCTG
Seq A exon
GCCTCCTATGCTGCCTCTTCTTTCCCTTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGCCCTTCACCCCCGAGGACACCGGTGCCGCTCAGGGCCTCACTATGTCAGTCTCTAACTCCTTTCTCAACCGGCACAGCTCCTTTCCTGTGCATTCG
Seq C2 exon
GAATCTCCCTCTGTCAAAGACGGCCATTCCAAAGACTCCACTTCAAACAGCAGTGCCATGGGGAAGGAAGGCAAAGATGGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712_MULTIEX2-1/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.264 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAGCCACAGCCATCTAT
R:
CCATCTTTGCCTTCCTTCCCC
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]