MmuEX0038772 @ mm10
Exon Skipping
Gene
ENSMUSG00000039844 | Rapgef1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:MGI Symbol;Acc:MGI:104580]
Coordinates
chr2:29710153-29722309:+
Coord C1 exon
chr2:29710153-29710308
Coord A exon
chr2:29719593-29719850
Coord C2 exon
chr2:29722224-29722309
Length
258 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCTGGGTTCTGTAGTAC
3' ss Score
4.89
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CAGGCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
Seq A exon
TACAAATCTGTGTTTAGGTCTTACTCCCAGGACTTCATGCCTCACCACCAAGCCTCCGTCCAACCTTTCCTTCCGCCTACCTCCTCTTCCTCTCCACATTTCCCACCTGTCCACACGTCCCAGAGCTCGGACTTAGCGGTGCCCACCGTAAGCAGTCCGCCTCCCAGCACCGTGGACGGGCCTCTCTCGTCTTCTCAGGACAGCAGCTTTCATGGGAACCCTGTCCGCCTTCCTTCCGAAACCTCTTTCACTGACTCG
Seq C2 exon
GAACCACCATCTGGGAAGGACGGACATCCCAGAGATCCTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAAATGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039844_MULTIEX2-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.808 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTATGCTGCTTCTTCC
R:
TCCCCATTTTCTCTGCTGTCC
Band lengths:
236-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types