BtaEX0029687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101744409-101761647:-
Coord C1 exon
chr11:101761445-101761647
Coord A exon
chr11:101746122-101746202
Coord C2 exon
chr11:101744409-101744497
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTCATCCTGTCTCCCCCAGAGT
3' ss Score
10.64
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAGCTGCTTGAGGACTACTCGGAGCCACAGCCTTCCATGTTCTACCAGACGCCGCAGAAGGAACACGTGTACCAGCAGAAGAACAAGCTTCTCATGGAGGTGTATGGCTTCAACGACTCCTTCAGCACCGGCGACGCCGCACACGATCTCGCCCCGCCCCCCGCCCTGCCCCCCAAGCAGCGGCAGCTG
Seq A exon
AGTGAGCACGCCTGTGAGGGGGACTACGTCAGTCTGTATTGCTCTGGCCAGAGCAGCGAGGAGCTGGCCCGCCCTCGAGGA
Seq C2 exon
GAGTCACCCGCGGCGAAGGATGGACACTCCAGAGACGCCACATCGGCCAGCTGTGTGCCCGGGAAGGAGGGCAGGGACAGCGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791_MULTIEX1-3/3=C1-C2
Average complexity
ME(1-3[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000032663fB5748
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACACGTGTACCAGCAGA
R:
ATGTGGCGTCTCTGGAGTGTC
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development