GgaEX0004874 @ galGal3
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
NA
Coordinates
chr17:6882417-6896050:-
Coord C1 exon
chr17:6895848-6896050
Coord A exon
chr17:6884077-6884169
Coord C2 exon
chr17:6882417-6882505
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCATCCTGTCTCCCCTAGAGT
3' ss Score
10.86
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TGATGGCGTACATGCAGTTTGTAGAGGACTACTCGGAGCCACAGCCATCTATGTTCTACCAGACCCCTCAGAACGAGCACATCTACCAGCAGAAGAACAAGCACCTCATGGAGGTCTACGGCTTCAACGACTCCTTTATCAGCTTAGACCCTTCTCAAGATCTGGCCCCCCCTCCTGCTCTCCCACCGAAGCAGCGACAGCTG
Seq A exon
AGTGAAAACGCCAGTGAGGAGGCTGGTGAGGGTGAATACGTCAATCTGTATTCCTCTGGCCAGAGCAACGGGGAACTCCCTCATTCTGGAGGA
Seq C2 exon
GAATCTCCCTCTGTCAAAGACGGCCATTCCAAAGACTCCACTTCAAACAGCAGTGCCATGGGGAAGGAAGGCAAAGATGGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGGCTTCAACGACTCCT
R:
CCATCTTTGCCTTCCTTCCCC
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]