MmuALTA0014851-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000039844 | Rapgef1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:MGI Symbol;Acc:MGI:104580]
Coordinates
chr2:29562718-29565828:+
Coord C1 exon
chr2:29562718-29562920
Coord A exon
chr2:29565673-29565675
Coord C2 exon
chr2:29565676-29565828
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CTATTTTGCCCTCCGCCCAGCAG
3' ss Score
4.55
Exon sequences
Seq C1 exon
TGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACAGCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAGGTGTACGGCTTCAGCGAGTCCTTCTGCGGTAGTGATTCCACGCAGGAGCTGGCCCCTCCACCCGCTCTGCCCCCCAAGCAACGGCAGCTG
Seq A exon
CAG
Seq C2 exon
GCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCTACTGTGTCCAGCAAACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCCTTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039844-19-19,19-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCCTTCTGCGGTAGTGA
R:
GGAAGAAGCAGCATAGGAGGC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: