MmuALTA0011842-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25104152-25104532:-
Coord C1 exon
chr2:25104425-25104532
Coord A exon
NA
Coord C2 exon
chr2:25104152-25104255
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TGTCCATAGGCTCATCCCAGGAG
3' ss Score
-0.12
Exon sequences
Seq C1 exon
GTGCTATGCGACTTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTTTGGACCTAATCCCTCGGATCCGCCCACGGGCCTTCTCCATTGCTTCCTCCCTACTG
Seq A exon
NA
Seq C2 exon
GAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-18-22,18-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCCATTCCTCCAGACTA
R:
AGCCACAAGGATCTGTAGCCT
Band lengths:
104-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: