MmuINT0112705 @ mm9
Intron Retention
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29779059-29781622:+
Coord C1 exon
chr2:29779059-29779159
Coord A exon
chr2:29779160-29781459
Coord C2 exon
chr2:29781460-29781622
Length
2300 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
AATGGAGTGCTCTCACCTAGGAA
3' ss Score
3.71
Exon sequences
Seq C1 exon
ATCGAACATCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCAGAAGGTGGATGAACTTGAGAG
Seq A exon
GTTAGAGGCACTTGGTCCCATGTCTGTCCTCTTCCTAGGACCTGAGACTTTCTGCCACTTAGCTGCTTTGTGCTTAGTGTGCTGAAGTATTGGAAGGACTCAAGGTCCTGGAAGGTACTAGGCAGAACTCAGAGGAAGAGCTGCTTGTGTTTCAGTGGTAAGCCTTGTGGACGAGAGGAAGGGGGGTCTCAGCCGGGAGAAATGCTGTGGGGCCATATGATCCAAGGACAGTCTTCTGGCAGGCGCCTTGTGGACGAGAGGAAGGGGGGTCTCAGCCGGGAGAGATGCTGTGGGACCATACGATCCAAGGACAGTCTTCTGGCAGGCGCCATTATCTCAAGAAGACCATCAGGCCTGCTTTGAGTGAAGCAGCCAGAGCACCCGCGTGCTGCTGACCAGCATTTCTGTGACCTCCCTGATCTTCCTACAGACTGTTAGAGACAGGCGTGGGTGAGGCTCACAGCACTTGTTGGCATCAGAAGCCCTGGCTTCAGGTCCGGTTGAGAGACTTAACCTCCCTTGTGACCTTGGGTAGATGCTTTAACTCTGCTGGACCTGGTTCCAGGTGTGAGGAAGGACGAACGTAGGAGTAGTGTGCCGCCTGAGACACAGCAGTCCTCAGTGAGAGGGTCTCATAAAGGGCTCTCCTGCCTCACTCACAAGCTGGTTGTATATGGTTGCCAGCTGGTACTATTAGTCCTAATTAGTGACTTTTTTTTTTTAAGGATATACTTTATTTTTGAATTGTCTCTATTTGTGAGTGTCTGGGAGTATGTATAGATGCCCACAGAGGCTCAGAGCCTCTGCAGCTGCAGTTATAGGCAGTTGTGAACTGCCTGATGTGAGTCCTGGGACCTGAAGTTGGTTCGTCCTTTGCAAGAGCAGTGTGTGCTCTTAACCATCAGGCCATCTCTCTAGCTCTTATCTTTTTTAACCCTATTTTTATTTATTTATTCCTATATATTTGTACCCAGCATAGTAACTGCATAAGTGTAGGTATTAGTGGACAACTTGTGGGAGTCAGTTCTCTTCTTTCACAATGTGGGTCCTGTGGATTGAACTCTGGCCATGGTGCTTTTCAGCGAGCACTTTTACCCACTGAACCATAGTTTGCCTGTCCCATAGTTTGCCTCTTTGAATCAGAGTGTAAGTTTGTGGCCTGCAACTCCACTTGCCTCAGCCACCTGAGTTCTGAGGTCATAGGCGTGGATGACCCAAATGTTATCTGTAAGGAAACCAAGCTCAGGCAATGATCATAACACCAAGCTCAGGCAATGATTATAACTTGCCCAGATGCACACAGCTGGTTCCTACAAATGATGTTCCTTAAGCTGGGAACTCTTCTTCCAGAACCATGGTGGCATCTGCAAGCAGGGGACTAGGATCCCAGAGTGGTAGCACACTACTAGTCCCAGTACTTGGGAGGCTAAGGCAGGAAGATTGCTGCCAGCTAGAGACCAGCTTGGGCTGTGTTATAAAACCCAGTCTTGGGAGAGATGGCTCAGCAGTTAAGGGCACTGACTGCTCTTTCAGAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTAATGCTCTCTTCTCATATGTCTGAAGACAGCTACAGTATACTCATACATAAATTTTTAAAAGAAAAAGTCGGAGGGCTAAGGGTCTTAGGGTCTTAATTGCCTTAAAGGTCAGGGTAGCCTACAGTGGGTCAGAACCAGACGGCCTCTGCTATGCCAAACTGACCCACAAACATAGCTAGGTCCAACAGGACCTGCAATGAGTGTTCTTTAAAGATGATGGTGTTCTGGAGGGACAGGAGAGATGCTGTGTAAAGTAGGGTAGCCACAGCTGTCCTGTGTCTGTCACATAAGGTACTGTGGCTCAGCTGAAGTCTCTTTGCTGAGCTGGGCTTTGGTGACAGACCTGTCAGCTCTGCTGCCCTCAGTCCTGTGTCTCCTGTTTCCTTCAGGCTTCACTTCCTTATTCCCAGAATGGGTTGGTGACAGCAGGCCTTCTGTGAGCTGCAGGTTGCTGTTCTCTGTGTGACACTAAGAAAGGGCCACCATGTGCACTCAGTTGCACATGCAGTCCTTTCCGCTCTCCCCACTGTCCTGTGACCCGCTGTTGCAGATGCACAGTCCAGCAGCCACCTTGCTGATTTGAAAATGCTTTCCGTGAAGATTGCTCAAGTGACAAGATTCCCAATTCAGGGGAGGCAGAAGCCCCCTGGCAGTGGATCAAGGCAGGCAGGTCATTGCAGGGTCTAATGGAGTGCTCTCACCTAG
Seq C2 exon
GAAACTGGAGGCTACCAGCGCCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGTTGGAGGAGAAAACGAGGGAGTGTGGGTCATTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-Odf2:NM_001113213:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(17.7=100)
A:
NA
C2:
PF103944=Hat1_N=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: