HsaINT0117817 @ hg19
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131258320-131260854:+
Coord C1 exon
chr9:131258320-131258420
Coord A exon
chr9:131258421-131260691
Coord C2 exon
chr9:131260692-131260854
Length
2271 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
GATTGAGTGCTTTCACCTAGGAA
3' ss Score
4.41
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
Seq A exon
GTTAGAGGCACTTGGTCCCATCTCTGTCCTCTTCCTAGGACCTGAGACTTTCAGCCACTTAGCTGTTTTTTGCTTAGTGTGCGGAAGTGTTGAGGGACTCGAGGCCCTGGAAGGTACTAGGCAGACCTCAGAGGAAAAGCTGCTTCCATTTCAGTGGTAAGCATTGTGGGAGAGAGCAAGGGGGCCTCTCAGCCTGGGGAGACACTCCATGACAGCATGATCAGGATCTGCCCACCTGTAGGCACCACCTGTCCCAAAAGGCATGCCTGGTCCAGGCCTGCCAGGAGGGCCCAGTTTGAATGGAGCAGCCAGTATACTGTGGTGGGGGCACTTCCCCACTCTTTTCTGCCCTTTCTTGCCAGTCACCCTTCCCAAGACCTTTCTGATCTGACCGTTCTCTGTTATTTACGGATTGTTGGAGGCAGTCAGAGGTGAAGGGTACGGCTTTGGGAATCAGAAGCCCTGGCCTTGGGGCCCAGCTCTGCCACTTACCAGCATTGTGATCTTGAGCAAATCATTTAATTCCTTTGAAGCTCAATTTCCTCCTTTTGAGGAAAGGGTCAAGGTAGAGTTTATCTATCTATCTATCTATCTATCTATCATCTATCTATCATGTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCGACCTCCTGGGCTCAAGCAATTCTCCTGCCACAGCCTCCCAAGTAGCTGGGACTACAGGCGTATGCCACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGGGGTTTCGCCGTGTTGCCCAGGCTGGTCCTGAACTCCTGGGTTCAAGTGATCCACCCACCTAGGCCTCCTAGAGTGCTGGGAGTACAGGCGGGAGCCACCACACCTGGCTGATAATAATCTTTTCATGGTGGTGGTGTGAGTCTTCAATGATATAATCCTGGTAAAGGTCCTAGCATGTTACCTGGCATAGAGAAGCGCTCAGTATAGCTTAGAACATGTTATTAGTTAGCTGGTATTATCCCAGTTTTAAATATGAGGAAACTGAGCTTGGGGAGGAGTTAAGTGACTTTCCCAGCATCACACTGTTGGTACCTGGCAAAGCATGACTTAGACCCGTGACTGTCTTCCTCGAGAGCTTCTGTGAGCATCTCTAAGAGGTAGGCAAGAGGCCGGGCGTGGTGTCTCACGCCTGTAATCCCAGCGTTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATGTATAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCATTGAGCCGAGATAGCACCACTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCCATCTCAAAAAAAAAGAGGTGGGCAAGAGTCCTCCAGCCCTGGTCCCAGCCTTAGTTTCAGAGGTGAAGGTGCCTGACATCCTAGGAGGCCCTAAGTGCCTCAGGTGGCCAGTGCACTTGCAAGGAGGCTACAACCAAGTGGGCTCCTTCCAGGCTCCACCTCTGCTCTGCCCTGCCAGCCTTGGAAATGGCAGCTAGATCCCCCAGGCCCTGCAGAGCTCCTTAAATTGGAAGGCATCCTGGAAGTGCACTGAGGACAGTGTGTGTATATCGGGATGGCCATATTTGCCCTATGGCTGGTCACACAAGATGTTGAGTGGTGTAGCTGAAGTCCCTTTGCTGTGGGAGGCAGCAGTGAACAGCAGAAGTTGCAGGCTTAGGTTTTGGTTACAGACTTGCCAGCTGTGCTGACTTCAGGCCAATGAATTCCCCTCTCTGAGGCTCAGTTTCTTCATTTCTGAAGTGGGGATAATAATGGTACCATTTTTCTGAGCTGCAAGTTGCTGTGTTCCATGTGATGCTATCCACACTTAACAAAGCCCACGGTCAGTCTCTGCGTTCCCACCCTTCACTCTGTTCTCTAACCAGTTGCTCCAGCTGCACAGTTCTTTGGTCGCCTTGCTGATCTGCAGATTTCTTTGGCTTATTCCTGTGGCTCCTTGGAGATTCTTGGCATGATGAGATCCCCAGTCCAGGAGAGGCTGGCAGCCCCCTGGCGGGGTGGAACATGACAGGTTGGGGTATGCCCAGGATCTGATTGAGTGCTTTCACCTAG
Seq C2 exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGGCTGGAGGAGAAAACACGGGAATGTGGGACCCTGGCAAGGCAGTTGGAGAGTGCCATTGAAGATGCGAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-ODF2:NM_002540:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)