HsaALTD0004486-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131258320-131260854:+
Coord C1 exon
chr9:131258320-131258420
Coord A exon
chr9:131258421-131258576
Coord C2 exon
chr9:131260692-131260854
Length
156 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GATTGAGTGCTTTCACCTAGGAA
3' ss Score
4.41
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
Seq A exon
GTTAGAGGCACTTGGTCCCATCTCTGTCCTCTTCCTAGGACCTGAGACTTTCAGCCACTTAGCTGTTTTTTGCTTAGTGTGCGGAAGTGTTGAGGGACTCGAGGCCCTGGAAGGTACTAGGCAGACCTCAGAGGAAAAGCTGCTTCCATTTCAGTG
Seq C2 exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGGCTGGAGGAGAAAACACGGGAATGTGGGACCCTGGCAAGGCAGTTGGAGAGTGCCATTGAAGATGCGAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-37-32,38-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGATGGCGAGAGAGAA
R:
TGCCTCCTCGCATCTTCAATG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)