BtaALTD0015290-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99071739-99073601:+
Coord C1 exon
chr11:99071739-99071839
Coord A exon
chr11:99071840-99071997
Coord C2 exon
chr11:99073481-99073601
Length
158 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GACTGAGTGCTTTCACCTAGGAA
3' ss Score
4.94
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAAGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
Seq A exon
GTTAGAGGCACTTGGTCCAATCTCTGTCCTCTTCCTAGGACCTGAGACTTTTCAGCCACTTAGCTGCTTTGGGCTCAGTGTGCAGAAATGTTTGAGGGACTCGAGGCCCTGGAAGGTACTAGGCAGACCTCAGAGGAAAAGCTGTTTCCACTGCAGTG
Seq C2 exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGACTGGAGGAGAAAACACGGGAATGCGGAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-34-34,35-34-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACACCAGGGGGACAAG
R:
GTTCCGCATTCCCGTGTTTTC
Band lengths:
218-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development