RnoALTD0020899-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8484887-8487295:+
Coord C1 exon
chr3:8484887-8484970
Coord A exon
chr3:8484971-8484987
Coord C2 exon
chr3:8487133-8487295
Length
17 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
AATGGAGTGCTCTCACCTAGGAA
3' ss Score
3.71
Exon sequences
Seq C1 exon
ATCGAACATCAGGGGGACAAGCTGGAGTTGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAACTGAGTCAGAAG
Seq A exon
GTGGATGAACTGGAGAG
Seq C2 exon
GAAACTGGAGGCCACCAGCACCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGGCTGGAGGAGAAAACGAGGGAGTGTGGGTCCTTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-54-49,55-49-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(19.1=100)
A:
NA
C2:
PF103944=Hat1_N=FE(31.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGAGAGAAACATCAGGC
R:
CTCCCTCTTGGCAATCACCTG
Band lengths:
116-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]