BtaALTD0015290-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99071739-99073601:+
Coord C1 exon
chr11:99071739-99071839
Coord A exon
NA
Coord C2 exon
chr11:99073481-99073601
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
GACTGAGTGCTTTCACCTAGGAA
3' ss Score
4.94
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAAGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
Seq A exon
NA
Seq C2 exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGACTGGAGGAGAAAACACGGGAATGCGGAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-34-34,35-34-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACACCAGGGGGACAAG
R:
GTTCCGCATTCCCGTGTTTTC
Band lengths:
218-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development